Table 3.
Most differentially expressed annotated genes in L1 vs. L2, L3 vs. L4, L5 vs. L6, and L7 vs. L8 libraries based on expressed tag frequency
| Gene ID | Relative abundance(TPM ratio) | Functional annotation |
|---|---|---|
| L1 vs. L2 up | ||
| Glyma13g17820 | 1009.41 | polyubiquitin |
| Glyma14g09420 | 428.92 | Papain family cysteine protease |
| Glyma18g50500 | 362.37 | Unknown |
| Glyma18g03310 | 101.05 | Hs1pro-1-like receptor |
| Glyma18g46060 | 74.04 | Rpp4 candidate |
| L1 vs. L2 down | ||
| Glyma18g51330 | 25.83 | NSP-interacting kinase |
| Glyma13g36750 | 17.27 | Endocytosis |
| Glyma08g43410 | 13.51 | BRG-1 ASSOCIATED FACTOR 60 |
| Glyma15g02250 | 11.63 | MYB transcription factor MYB52 |
| Glyma04g37460 | 11.29 | DEK PROTEIN |
| L3 vs. L4 up | ||
| Glyma02g45690 | 61.76 | similar to PDF |
| Glyma09g02210 | 57.05 | Serine/threonine protein kinase |
| Glyma10g40580 | 33.32 | Gibberellin regulated protein |
| Glyma05g04490 | 25.12 | Protease inhibitor/seed storage/LTP family |
| Glyma14g05300 | 24.6 | Glycosyl hydrolases family 17 |
| L3 vs. L4 down | ||
| Glyma09g04150 | 223.25 | unknown |
| Glyma19g38570 | 94.8 | Late embryogenesis abundant protein |
| Glyma11g37360 | 35.34 | Glyceraldehyde 3-phosphate dehydrogenase |
| Glyma08g28800 | 28.14 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
| Glyma06g14330 | 27.8 | Ribosomal protein L6 |
| L5 vs. L6 up | ||
| Glyma03g08020 | 240.28 | ABC transporter related protein |
| Glyma19g43830 | 52.95 | cyclophilin |
| Glyma16g26950 | 41.45 | protein-l-isoaspartate methyltransferase |
| Glyma01g30060 | 32.87 | CBR-TTR-47 protein |
| Glyma14g02700 | 26.84 | OTU-like cysteine protease family protein |
| L5 vs. L6 down | ||
| Glyma19g38570 | 193.57 | harpin inducing protein |
| Glyma18g47100 | 62.39 | conserved hypothetical protein |
| Glyma04g40170 | 39.29 | methyl esterase 17 |
| Glyma18g09290 | 36.76 | disease resistance protein |
| Glyma18g45250 | 34.4 | vestitone reductase |
| L7 vs. L8 up | ||
| Glyma16g24920 | 106.6 | functional candidate resistance protein KR1 |
| Glyma12g04380 | 62.54 | transcription factor homolog BTF3-like protein |
| Glyma19g36060 | 40.17 | glutathione S-transferase omega |
| Glyma04g16010 | 17.8 | hypothetical protein |
| Glyma14g07190 | 17.63 | dehydration-responsive family protein |
| L7 vs. L8 down | ||
| Glyma18g45250 | 102.34 | NAD dependent epimerase/dehydratase family |
| Glyma06g14330 | 79.32 | Ribosomal protein L6 |
| Glyma03g03830 | 61.24 | UDP-glucuronosyl and UDP-glucosyl transferase |
| Glyma01g05800 | 42.47 | membrane associated ring finger 1,8 |
| Glyma05g35490 | 34.97 | predicted protein |