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. Author manuscript; available in PMC: 2011 Nov 8.
Published in final edited form as: Proteins. 2009 Mar;74(4):837–846. doi: 10.1002/prot.22192

Table IV.

Performance of the Best PLS Models for the Seven Drugs

Model Drug Interaction fields n1a NPCb Nc r2 d q2 e RMSEf XRMESg n2h
rtest2
i
RMSEtestj
1 APV ΔEvdw, ΔGpolar 1551 50 118 0.852 0.814 0.573 0.645 776 0.810 0.636
2 ATV ΔEvdw, ΔEele 531 110 125 0.898 0.805 0.514 0.719 265 0.828 0.669
3 IDV ΔEvdw, ΔGpolar 1629 50 124 0.870 0.838 0.620 0.694 815 0.842 0.657
4 LPV ΔEvdw, ΔEele, ΔGGB 1074 95 214 0.909 0.864 0.580 0.712 537 0.885 0.631
5 NFV ΔEvdw, ΔEele, ΔGGB 1643 100 220 0.899 0.871 0.607 0.687 821 0.859 0.712
6 RTV ΔEvdw, ΔEele, ΔGGB 1605 120 223 0.940 0.908 0.513 0.635 802 0.921 0.581
7 SQV ΔEvdw, ΔEele, ΔGGB 1630 120 223 0.901 0.839 0.623 0.802 815 0.855 0.730
a

n1 is the number of samples in the training set.

b

NPC is the number of principal components used in the model.

c

N is the number of MIECs terms.

d

r2 is the squared regression coefficient for the training set.

e

q2 is the squared leave-one-out cross-validation regression coefficient.

f

RMSE is the root mean square error for the training set.

g

XRMSE is the leave-one-out cross-validation root mean square error for the training set.

h

n2 is the number of samples in the test set.

i

rtest2 is the squared regression coefficient for the test set.

j

RMSEtest is the root mean square error for the test set.