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. Author manuscript; available in PMC: 2012 Mar 1.
Published in final edited form as: Mol Microbiol. 2011 Jan 19;79(6):1445–1461. doi: 10.1111/j.1365-2958.2011.07534.x

Table 2. Primers used in this study.

Primer name Sequence
YopHKO_P1 5′-GAAGCAGCTCCAGCCTACACCATGCTTCCCTCCTTAATTAAATACACGCC
YopHKO_P4 5′-GGTCGACGGATCCCCCGGAATTGTAAATATTTATTCCTATGAGTAAATAAA
YopH upstream 5′-GCATCCGTCCGGTGGCCGTAGGCCG
YopH downstream 5′-ACTACATACACACTGGGAAAATCTC
GST-BamHI-For 5′-AAGGATCCTCCCCTATACTAGGTTAT
GST-BamHI-Rev 5′-AAGGATCCGTCACGATGAATTCCCGG
YopK-KpnI-For 5′-AAGGTACCTTTATTAAAGATACTTATAACATGCGT
YopQ-Hind-Rev 5′-AAAAGCTTTCATCCCATAATACATTCTTGATC
PKD13Kan.P1 5′-GTGTAGGCTGGAGCTGCTTC
PKD13Kan.P4 5′-ATTCCGGGGATCCGTCGACC
YopE_R144A For 5′-GAGTGATACTGCCGGCAAGAGGGCCGCTGC
YopE_R144A Rev 5′-GCAGCGGCCCTCTTGCCGGCAGTATCACTC
yopNpro-EcoRI 5′-AAGAATTCACCCACCCCAACCTGAT
yopNpro-Ndel 5′-AACATATGAACTACTCCCTGAGATG
yopNORF-NdeI 5′-AACATATGACGACGCTTCATAACC
YopNORF-KpnI 5′-AAGGTACCGAAAGGTCGATCGCCATT
YopHORF-NdeI 5′-AACATATGAACTTATCATTAAGCGAT
YopHORF-KpnI 5′-AAGGTACCGCTATTTAATAATGGTCG
YopJORF-NdeI 5′-AACATATGATCGGACCAATATCACAA
YopJORF-KpnI 5′-AAGGTACCTACTTTGAGAAGTGTTTT
yopK-upstream 5′-AAGCTTTGGCCTTGTGCAT
yopK-downstream 5′-GCATGCCTCTGGTGTCAGTGCAGGAT
GST-YopK-L 5′-GTTTATAAAGTAAATTTGGGAGTAGTAACTATGTCCCCTATACTAGGTTATTG
GST-YopK-R 5′-AGCACGCATGTTATAAGTATCTTTAATAAAATCCGATTTTGGAGGATGGTCGC
yopE-upstream 5′-AGATCTGACGCTTTCGCGATGAATGC
yopE-downstream 5′-AAGCTTTTTGCCGTTATAAATG
yopEKO-SalI 5′-AAGTCGACGGTAATTCTGATAGTG
yopEKO-Hind1 5′-AAAAGCTTGCAGGGGCAGTGATG
yopEKO-Hind2 5′-AAAAGCTTGAGATCAAAGGGCTGG
yopEKO-XbaI 5′-AATCTAGAGATGAAGCCTCAAAGG
yopQKO-P1 5′-GTTTATAAAGTAAATTTGGGAGTAGTAACTATGAGTGTAGGCTGGAGCTGCTTC
yopQKO-P2 5′-TCAACTACCATATCCCAAACTCTTTAATATAGCTTCACATATGAATATCCTCCTTAG
pFLP3_tet_forward 5′-TTCTTGCGGAGAACTGTGAATGCG
pFPL3_tet_reverse 5′-GGTGCCTGACTGCGTTAGCAATTT
pFLP3_tet_forward A 5′-CTGTTGCATGGGCATAAAGTTGCC
pFLP3_tet_reverse A 5′-ACACGCACTATGCCGTTCTTCTCA
YopQ-Bam-For 5′-AAGGATCCTTTATTAAAGATACTTATAACATGCGT
RpoA_TopoFor 5′-CACCCAGGGTTCTGTGACAGAG
RpoA_TopoRev 5′-TTACTCGTCAGCAATGCT
YopM_TopoFor 5′-CACCTTCATAAATCCAAGAAAT
YopM_TopoRev 5′-TACTCAAATACATCATCT
YopE_TopoFor 5′-CACCAAAATATCATCATTTATT
YopE_TopoRev 5′-TCACATCAATGACAGTAA