Table 3.
Parameters a | CoMFA | CoMSIA b |
||||
---|---|---|---|---|---|---|
A | B | C | D | E | ||
Optimal PLS component | 4 | 3 | 3 | 3 | 2 | 3 |
q2 | 0.840 | 0.874 | 0.866 | 0.842 | 0.856 | 0.840 |
Scv | 0.476 | 0.407 | 0.419 | 0.456 | 0.427 | 0.459 |
r2 | 0.988 | 0.980 | 0.982 | 0.977 | 0.961 | 0.975 |
SEE | 0.128 | 0.160 | 0.154 | 0.174 | 0.222 | 0.180 |
F | 555.64 | 469.24 | 510.31 | 394.83 | 357.74 | 370.67 |
r2cv | 0.837 | 0.864 | ||||
Fractions | ||||||
Steric | 0.460 | 0.104 | 0.203 | 0.153 | 0.133 | |
Electrostatic | 0.540 | 0.217 | 0.386 | 0.297 | 0.264 | 0.347 |
Hydrophobic | 0.212 | 0.410 | 0.336 | 0.399 | ||
Donnor | 0.183 | 0.360 | ||||
Acceptor | 0.285 | 0.214 | 0.243 | 0.254 | ||
r2pred | 0.694 | 0.646 | 0.581 | 0.576 | 0.663 | 0.671 |
q2, leave-one-out cross-validation correlation coefficient; Scv, leave-one-out cross-validated standard error; r2, conventional correlation; SEE, standard error of estimate; F, F-test value; r2 cv, conventional correlation of group cross-validation;
CoMSIA model calculated using different field combinations. A, all fields; B, Steric, electrostatic and hydrophobic fields; C, Steric, electrostatic hydrophobic and acceptor fields; D, Steric, electrostatic donor and acceptor fields; E, electrostatic hydrophobic and acceptor fields.