Table 1. Crystal parameters, data-collection and refinement statistics.
Crystal parameters | |
Space group | P212121 |
Unit-cell parameters (Å) | a = 83.26, b = 122.06, c = 181.996 |
Data-collection statistics | |
Wavelength (Å) | 0.97857 |
Resolution range (Å) | 34.33–2.4 (2.46–2.4) |
No. of reflections (measured/unique) | 459689/70340 |
Completeness (%) | 99.5 (97.6) |
Rmerge† | 0.127 (0.42) |
Multiplicity | 6.2 (5.3) |
Mean I/σ(I) | 13.4 (3.93) |
Refinement and model statistics | |
Resolution range (Å) | 34.33–2.4 |
No. of reflections (work/test) | 70340/3512 |
Rcryst‡ | 0.151 (0.197) |
Rfree§ | 0.208 (0.245) |
R.m.s.d. bonds (Å) | 0.006 |
R.m.s.d. angles (°) | 0.933 |
B factors (Å2) | |
Protein | 34.08 |
Solvent | 35.92 |
Phosphate | 33.56 |
Tris | 42.59 |
No. of protein atoms | 13163 |
No. of protein waters | 692 |
No. of auxiliary molecules | 2 phosphate and 2 Tris |
Ramachandran plot (%) | |
Favorable region | 96.1 |
Additional allowed region | 3.9 |
PDB entry | 3qde |
R merge = , where I i(hkl) is the intensity of an individual measurement of the reflection and 〈I(hkl)〉 is the mean intensity of the reflection.
R cryst = , where F obs and F calc are the observed and calculated structure-factor amplitudes.
R free was calculated as R cryst using a randomly selected 4.9% of the unique reflections that were omitted from the structure refinement.