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. 2011 Oct 12;135(14):144110. doi: 10.1063/1.3641894

Table 2.

Results from predicting the BSSE of 21 independent chemical fragments involved in the binding of indinavir to HIV-2 protease. The fragments are identified by system number and are labeled by interaction types: np: nonpolar, p: polar, pc: positively charged, and nc: negatively charged. The last two rows contain arithmetic and Pythagorean sums for the propagated systematic and random errors. Units are kcal∕mol.

Number Type Predicted BSSE Measured BSSE Predicted error Measured error
1 np 1.49 2.05 0.30 −0.56
2 np 0.83 0.90 0.30 −0.07
3 pc 1.66 1.45 0.38 0.21
4 nc 10.40 8.27 1.01 2.14
5 nc 6.97 6.90 0.93 0.07
6 nc 2.10 3.47 0.93 −1.37
7 p 2.62 3.07 0.17 −0.44
8 np 1.45 2.13 0.30 −0.68
9 np 1.41 1.98 0.30 −0.56
10 np 2.08 1.90 0.30 0.19
11 np 1.26 1.33 0.30 −0.06
12 np 1.26 1.66 0.30 −0.40
13 np 1.43 1.72 0.30 −0.30
14 np 0.91 0.70 0.30 0.21
15 np 0.84 1.10 0.30 −0.26
16 np 0.73 0.63 0.30 0.11
17 np 1.51 1.15 0.30 0.36
18 np 1.33 1.28 0.30 0.05
19 np 0.88 1.05 0.30 −0.18
20 np 1.62 1.57 0.30 0.05
21 nc 3.26 2.77 0.92 0.49
Arithmetic sum   46.06 47.08 −1.02
Total error bar   2.26