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. 2011 Oct 19;2:12. doi: 10.1186/1759-8753-2-12

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Copyright ©2011 Kojima and Jurka; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Phylogeny of Cryptons, DUF3504 genes and other eukaryotic tyrosine recombinases. The numbers at nodes are bootstrap values over 40. Open circles indicate the clusters of Cryptons, and filled circles show the clusters of DUF3504 genes. YR = tyrosine recombinase. Prefixes of names are as follows. Cry = Crypton; 1958 = KIAA1958. Accession numbers of DUF3504 genes are shown in Additional file 5. Sequences of the transposable elements are deposited in Repbase http://www.girinst.org/repbase/. Other abbreviations and accession numbers are as follows. FLP = FLP recombinase of the 2-micron plasmid in Saccharomyces cerevisiae (NP_040488); FLP_Klac = FLP recombinase of the plasmid pKD1 in Kluyveromyces lactis (YP_355327); CRE = Cre recombinase of the enterobacteria phage P1 (YP_006472); Vlf1_AcNPV = very late expression factor 1 from the Autographa californica nucleopolyhedrovirus (NP_054107); Tn916 = Tn916 transposase from Enterococcus faecalis (NP_0687929); XerD = XerD from Escherichia coli (NP_417370); Lambda = lambda phage recombinase (NP_040609); At_Ti = recombinase from the Agrobacterium tumefaciens Ti plasmid (NP_059767); SpPat1 from Strongylocentrotus purpuratus (obtained at http://biocadmin.otago.ac.nz/fmi/xsl/retrobase/home.xsl). Suffixes for species names are as follows. Animals: Hs = human, Homo sapiens; Oa = platypus, Ornithorhynchus anatinus; Gg = chicken, Gallus gallus; Tg = zebra finch, Taeniopygia guttata; Ac/ACa = lizard, Anolis carolinensis; Xt/XT = frog, Xenopus tropicalis; Dr/DR = zebrafish, Danio rerio; OL = medaka, Oryzias latipes; Cm = chimaera, Callorhinchus milii; SP = sea urchin, Strongylocentrotus purpuratus; SK = acorn worm, Saccoglossus kowalevskii; Dm = fruit fly, Drosophila melanogaster; Tc/TC/TCa = beetle, Tribolium castaneum; NVi = parasitic wasp, Nasonia vitripennis; CQ = southern house mosquito, Culex quinquefasciatus; AA = yellow fever mosquito, Aedes aegypti; DPu = water flea, Daphnia pulex; Acal = sea hare, Aplysia californica; Sm = bloodfluke, Schistosoma mansoni; NV = sea anemone, Nematostella vectensis. Fungi: RO = Rhizopus oryzae; CGlo = Chaetomium globosum; TS = Talaromyces stipitatus; CI = Coccidioides immitis; FO = Fusarium oxysporum. Stramenopiles: PI = Phytophthora infestans; PS = Phytophthora sojae; PU = Pythium ultimum; HAra = Hyaloperonospora arabidopsidis; ALai = Albugo laibachii; PTri = Phaeodactylum tricornutum. Plants: CR = Chlamydomonas reinhardtii.