TABLE 3.
16S rDNA sequence similarity between sequences from samples and related taxa
| Phylogenetic group (DDBJ/EMBL/GenBank accession no.) | % Similarity | DGGE band | Presence of the DGGE band at sampling site:
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|
| C (279°C) | G (310°C) | B (300°C) | A (55°C) | E (25-36°C) | H (3-50°C) | D (3°C) | F (4°C) | |||
| Bacteria | ||||||||||
| Aquificae | ||||||||||
| Persephonella hydrogenophila (AB086419) | 97 | SUIYO-E8, E9 | + | |||||||
| Thermovibrio ruber (AJ316619) | 95 | SUIYO-E10 | + | |||||||
| “Chlorobia” | ||||||||||
| Pelodictyon luteolum (Y08107) | 98 | SUIYO-E14 | + | |||||||
| α-Proteobacteria | ||||||||||
| Methylobacterium sp. strain SY-2 (AJ278347) | 99 | SUIYO-E13 | + | + | ||||||
| γ-Proteobacteria | ||||||||||
| Thiomicrospira sp. strain MA2-6 (L40811) | 100 | SUIYO-E1, -E3 | + | + | ||||||
| Arctic96AD-3 (AF354607) | 92 | SUIYO-E5, -E6 | + | |||||||
| 98 | SUIYO-E12 | + | ||||||||
| Arctic96AD-9 (AF354608) | 97 | SUIYO-E11 | + | |||||||
| Strain BD1-1 (AB015514) | 89 | SUIYO-E4 | + | |||||||
| δ-Proteobacteria | ||||||||||
| Bdellovibrio sp. strain JS10 (AF084863) | 92 | SUIYO-E2 | + | |||||||
| Ethylbenzene-degrading consortium DGGE band C (AB062689) | 97 | SUIYO-E15 | + | |||||||
| ɛ-Proteobacteria | ||||||||||
| Clone P. palm C/A 26 (AJ441213) | 92 | SUIYO-E7 | + | |||||||
| Archaea | ||||||||||
| Crenarchaeota | ||||||||||
| Thermococcus sp. strain MZ11 (AY017179) | 94 | SUIYO-A16 | + | |||||||
| Not determined | 82 | SUIYO-A17 | + | |||||||