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. 2011 Nov 10;6(11):e26837. doi: 10.1371/journal.pone.0026837

Figure 3. Sequence logo for the de-novo calculated MYC.01-binding site.

Figure 3

The transcription factor binding matrix (Table S6) was generated by CoreSearch using the top 100 sequences of MYC genomic intervals (Table S5). A typical E-box motive (CACGTG) was obtained. Highly conserved positions are represented by higher stacks of base symbols A, C, G, and T than less conserved positions. The relative frequencies of the corresponding bases at each position are represented by the relative heights of the symbols within in each stack.