Table 3. Genomic and ORF alignments.

	Genomic alignments			Orthologous ORF alignments
	Length (bases)	No. SNPsa	% SNP density	No. ortholog families	Total alignment length (bases)	No. SNPs	% SNP density
cp26	26,591	1,267	4.76	26	26,451	826	3.12
lp54b	46,860	870	1.86	61	53,383	661	1.24
Main chromosome	NAc	NA	NA	750	909,845	12,311	1.35
Total	73,451	2,137	2.90	837	989,679	13,798	1.39

^aTwo-state sites only.

^bPFam54 gene array excluded for lack of synteny.

^cNot available.