Table 2.
Running times on RDP dataset
| 0.99 | 0.97 | 0.95 | |
|---|---|---|---|
| DNACLUST exact | 204 | 372 | 960 |
| UCLUST exact | 7800 | 5040 | |
| DNACLUST inexact | 74 | 76 | 150 |
| UCLUST inexact | 43 | 29 | 16 |
The running times (minutes) of DNACLUST and UCLUST with various similarity thresholds on the RDP dataset.
The running times were measured on a single 2.8GHz processor of an AMD64 Linux workstation. The command line options were:
dnaclust infile.fasta -l -s 0.9x -k 5 [--approximate-filter] > outfile.cluster uclust --input infile-sorted.fasta --uc outfile.cluster --id 0.9x [--exact]