Table 1. HET-s homologs showing significant structural homology to the 2RNM solenoid.
Threading Score | Accession Numbera | Protein | DBb | Structural Model | |||
Template Chain | % Identityc | RMSDd | Prochecke | ||||
LOW | [GI: 242774612] | Hypothetical protein, Talaromyces stipitatus, TSTA_087480 | NR | C | 17.7 | 0.816 | 88.1 |
LOW | EEU47148.1 | Hypothetical protein, Nectria haematococca mpVI 77-13-4 | BROAD | A | 36.7 | 0.616 | 84.7 |
LOW | EEU42351.1 | Hypothetical protein, Nectria haematococca mpVI 77-13-4 | BROAD | C | 31.6 | 0.736 | 82.8 |
LOW | EEU39630 | Hypothetical protein, Nectria haematococca mpVI 77-13-4 | BROAD | C | 24.1 | 1.048 | 82.3 |
MEDIUM | EEU38121.1 | Hypothetical protein, Nectria haematococca mpVI 77-13-4 | BROAD | A | 35.4 | 0.487 | 77.6 |
LOW | FOXG14669 | Conserved hypothetical protein, Fusarium oxysporum | BROAD | C | 34.2 | 1.460 | 81.8 |
LOW | FOXG17103 or FOXG17314 | Conserved hypothetical protein, Fusarium oxysporum | BROAD | C | 29.1 | 1.073 | 80 |
LOW | FVEG13490 | Fusarium verticilliodes, hypothetical protein | BROAD | C | 26.6 | 1.172 | 80.7 |
LOW | FG 08145.1[GI: 46127535] | Hypothetical protein, Fusarium graminearum | NR | D | 31.6 | 0.667 | 75 |
MEDIUM | FG 10600.1[GI: 46138171] | Hypothetical protein, Fusarium graminearum | NR | A structure based on experimental analysis is proposed by Wasmer et al, 2010 [10] | |||
LOW | [GI: 320592582] | Small s protein, Grosmannia clavigera kw1407 | NR | A | 26.6 | 0.492 | 83.3 |
a : The Genbank (GI) identification number from NR and BROAD accession numbers are provided, where available.
b : NR: non-redundant database, BROAD: Broad Fungal Genomes Initiative.
c : Percentage identity based on comparison with template in pGenThreader.
d : RMSD calculations are performed against the NMR model 9 of the [PDB: 2RNM] template.
e : Represents percentage of residues in the most favored region.