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Comparison of Scaffold Correctness for Different Methods
| E. coli | B. pseudomallei | S. cerevisiae | D. melanogaster | |
|---|---|---|---|---|
| No. of breakpoints | ||||
| Velvet | 3 | — | 6 | 11 |
| Bambus | 31 | — | 57 | 107 |
| SOPRA | 1 | — | 67 | 10 |
| Opera | 0 | — | 1 | 4 |
| No. of discordant edges | ||||
| Velvet | 4 | — | 7 | 16 |
| Bambus | 19 | 673 | 55 | 423 |
| Opera | 1 | 19 | 3 | 4 |
Breakpoints were not assessed for B. pseudomallei due to the lack of a finished reference for the sequenced strain.
