Table 2. Clonality values (copies per read “cpr”) for each sample and capture method. MyS: MySelect, SuS: SureSelec, Sh: Shotgun.

	Arizona				Chile				GMAG 10237-18				GMAG 10189
	Sh	MyS 11	MyS 24	SuS	Sh	MyS 11	My S 24	SuS	Sh	MyS 11	My S24	SuS	Sh	MyS 11	MyS 24	SuS
Avg clonality total	1.26	8.53	10.37	2.75	1.24	16.88	9.00	2.76	1.84	11.09	9.33	8.22	1.05	8.70	8.29	1.90
Avg clonality in targets	13.17	106.20	129.93	54.34	13.48	355.38	144.30	50.74	3.68	402.40	162.32	597.47	2.66	86.89	73.56	42.53
Ratio	10.46	12.45	12.53	19.73	10.87	21.05	16.03	18.42	2.00	36.27	17.40	72.66	2.53	9.99	8.88	22.38
Chloroplast	1.87	73.90	95.20	30.21	1.48	160.20	78.80	24.10	1.97	283.30	120.24	266.42	1.13	41.04	39.02	20.13
With repeats	34.00	262.20	311.85	175.14	26.60	828.57	331.40	165.42	4.38	565.50	234.30	915.56	3.13	216.30	181.50	135.73
Without repeats	1.10	16.24	18.82	3.30	1.15	107.33	45.42	3.13	2.00	236.10	58.57	154.26	1.00	23.61	20.70	2.83