Table 2. Binding energy decomposition per residue for WT and R248Q p53-DNA complexes at 300, 305 and 310 K.
Residue | BEWT-BEWT300K (kcal/mol) | BERQ-BEWT300K (kcal/mol) | ||||
Temperature (K) | Temperature (K) | |||||
300 | 305 | 310 | 300 | 305 | 310 | |
119 | 0 | −3 | −5 | −5 | −1 | −4 |
120 | 0 | 1 | −4 | −3 | 2 | −1 |
122 | 0 | 1 | 0 | 2 | 1 | 2 |
174 | 0 | 0 | 1 | 0 | 0 | 1 |
180 | 0 | −1 | −1 | 0 | 0 | −1 |
184 | 0 | 0 | −1 | 0 | −1 | −1 |
239 | 0 | 2 | 3 | 0 | −1 | 2 |
240 | 0 | 0 | 0 | 0 | 0 | 1 |
241 | 0 | 0 | 0 | 1 | 1 | 2 |
243 | 0 | 0 | 0 | −2 | −1 | 0 |
248 | 0 | 1 | −2 | 8 | 9 | 8 |
273 | 0 | 0 | 0 | 1 | 3 | 1 |
275 | 0 | 0 | −1 | −2 | −1 | 0 |
276 | 0 | −1 | −2 | −1 | −2 | −1 |
277 | 0 | −2 | −1 | −2 | −1 | −2 |
ZN+2 | 0 | 0 | 0 | −1 | −1 | 0 |
DNA300 | 0 | 0 | 0 | 1 | 0 | 0 |
DNA301 | 0 | −1 | 0 | 0 | 1 | 0 |
DNA302 | 0 | 2 | 2 | 1 | 3 | 3 |
DNA303 | 0 | 2 | 0 | 0 | −1 | 2 |
DNA304 | 0 | 0 | −3 | −2 | −2 | −2 |
DNA315 | 0 | −1 | −1 | −1 | −1 | −2 |
DNA306 | 0 | −1 | 1 | 0 | 0 | −1 |
DNA317 | 0 | −1 | −3 | 2 | 1 | 2 |
DNA318 | 0 | 2 | 3 | 3 | 2 | 3 |
DNA319 | 0 | 0 | 0 | 0 | 1 | 0 |
DNA320 | 0 | −2 | 0 | −2 | −1 | −2 |
DNA324 | 0 | 1 | 1 | 3 | 2 | 2 |
DNA325 | 0 | 2 | 1 | 2 | 1 | 1 |
DNA326 | 0 | 1 | 0 | 0 | 0 | 1 |
Binding energies are given relative to the energy of the DNA−bound WT p53 complex at 300 K. Residues 119, 120, 248 and 277 from p53 contributed the most to temperature-induced changes in binding energy. At least eight DNA residues involved in close contacts with the protein contributed significantly to binding.