Figure 5.

(A) Correlation plot of the average distance, $\langle D\rangle$, between the minimum, $\Delta f_{\text{min}}$, of $\Delta f\left(x\right)$ in the range (−150,0) and the maximum of the nucleosome occupancy in the range (0,150) for +1 nucleosome (see CDC11 gene example in (Fig. 4)). All 5014 genes from all clusters are grouped into 23 bins (218 genes in each bin). D and $\Delta f_{\text{min}}$is computed for each individual gene in each bin, and the averages, $\langle D\rangle$ and $\langle \Delta f_{\text{min}}\rangle$, are then computed in each bin. (B) The standard deviation, ${\sigma }_D$, of D for individual genes is computed in each bin as a function of $\langle \Delta f_{\text{min}}\rangle$. (C) The average distance, $\langle D\rangle$, between the minimum, $\Delta f_{\text{min}}$, of $\Delta f\left(x\right)$ in the range (−150,0) and the maximum of the nucleosome occupancy in the range (150,300), corresponding to the +2 nucleosome. (D) The standard deviation, ${\sigma }_D$, of D for individual genes for the +2 nucleosome is computed in each bin as a function of $\langle \Delta f_{\text{min}}\rangle$. All free energies are normalized per bp, as above.