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. 2011 May 1;8(3):365–371. doi: 10.4161/rna.8.3.14804

Table 1.

Primer sequences

Primer Sequence Template Comments
5′CUGBP-PC AGG ATC CAA TGA ACG GCA CCC TGG A GFP-CUGBP1 plasmid primers for subcloning hCUGBP1 cDNA into pCDNA3.1-HisB
3′CUGBP-PC ACT CGA GTC AGT AGG GCT TGC TGT CA
5′CUGBP-PR AGC TCG AGA ATG AAC GGC ACC CTG GA pCDNA3.1-HisB-CUGBP1 primers for subcloning hCUGBP1 cDNA into pRSETB
3′CUGBP-PR AGA AGC TTT CAG TAG GGC TTG CTG C
5′p27UTR GGA TCC TAA TAC GAC TCA CTA TAG GCT TCT TCG TCA GCC TCC CTT pTKLL472 primers for p27 5′UTR DNA amplification
3′p27UTR CTT TCT CCC GGG CCG TGG CTC GTC GGG G
5′p27UTR226 GGA TCC TAA TAC GAC TCA CTA TAG GCC TCT CCG CCC TCC CGC TCG C pTKLL472 primers for p27 5′UTR 226–472 truncation DNA amplification
3′p27UTR CTT TCT CCC GGG CCG TGG CTC GTC GGG G
5′p27UTR GGA TCC TAA TAC GAC TCA CTA TAG GCT TCT TCG TCA GCC TCC CTT pTKLL472 primers for p27 5′UTR 1–219 truncation DNA amplification
3′p27UTR219 CTT TCT CCC GGG CCG TGG CTC GTC GGG G
5′p27UTR GGA TCC TAA TAC GAC TCA CTA TAG GCT TCT TCG TCA GCC TCC CTT pTKLL472-ΔU primers for p27 5′UTR U-rich region deletion DNA amplification
3′p27UTR CTT TCT CCC GGG CCG TGG CTC GTC GGG G
5′-472-Luc-PolA GGA TCC TAA TAC GAC TCA CTA TAG GCT TCT TCG TCA GCC TCC CTT pTKLL472 primers for p27 5′UTR-Luciferase-poly A DNA amplifcation
3′-472-Luc-PolA TTT TTT TTT TTT TTT TTT TTT TTT TTT TTT AGC TAA GAA TTT CGT CAT CG
5′-rev472-Luc-PolA TAA TAC GAC TC A CT A TAG GAA AGA GGG CCC AGA CGT pTKLL472R primers for p27 rev5′UTR-Luciferase-poly A DNA amplifcation
3′-rev472-Luc-PolA TTT TTT TTT TTT TTT TTT TTT TTT TTT TTT AGC TAA GAA TTT CGT CAT CG
5′-ctrl-Luc-PolA TAA TAC GAC TC A CTA TAG GG pCDNA3.1-Luc primers for Luciferase-poly A DNA amplifcation
3′-ctrl-Luc-PolA TTT TTT TTT TTT TTT TTT TTT TTT TTT TTT AGC TAA GAA TTT CGT CAT CG