Table 3.
Summary of parameter estimates and significance levels of the multivariate generalized linear regression analysis for CpG transversion rate
| Dataset A | Dataset B | Dataset C | ||||
|---|---|---|---|---|---|---|
| Estimate | -log10(p) | Estimate | -log10(p) | Estimate | -log10(p) | |
| Divergence | 0.2044 | > 15.70 | 0.1823 | > 15.70 | 0.1414 | > 15.70 |
| Methylation level | 0.0222 | 1.14 | 0.0534 | 14.88 | 0.0781 | > 15.70 |
| GC content | -0.0918 | > 15.70 | -0.1401 | > 15.70 | -0.1076 | > 15.70 |
| Transcription level | -0.0440 | 3.84 | -0.0322 | 8.15 | -0.0336 | 3.64 |
| Female recombination rate | 0.0071 | 0.26 | -0.0084 | 0.83 | 0.0044 | 0.19 |
| Male recombination rate | 0.0022 | 0.07 | -0.0006 | 0.04 | -0.0011 | 0.04 |
| Explained deviance | 356 | 1,421 | 519 | |||
| Residual deviance | 9,979 | 15,544 | 2,986 | |||
| na | 13,038 | 21,636 | 3,871 | |||
| AICb | 21,460 | 50,718 | 12,684 | |||
Dataset A contains no CpG islands (CGIs) or DNase I hypersensitive sites (DHSs)), dataset B contains DHSs but no CGIs, and dataset C contains both CGIs and DHSs. aSample size. bAkaike Information Criterion.