Table 5.
Summary of parameter estimates and significance levels of the multivariate generalized linear regression analysis for CpH transition rate
| Dataset A | Dataset B | Dataset C | ||||
|---|---|---|---|---|---|---|
| Estimate | -log10(p) | Estimate | -log10(p) | Estimate | -log10(p) | |
| Divergence | 0.2559 | > 15.70 | 0.2205 | > 15.70 | 0.2094 | > 15.70 |
| Methylation level | 0 | 0 | 0.0036 | 1.34 | 0.0032 | 0.52 |
| GC content | -0.1366 | > 15.70 | -0.1389 | > 15.70 | -0.1681 | > 15.70 |
| Transcription level | 0.0084 | 3.08 | 0.0065 | 6.09 | 0.0063 | 1.59 |
| Female recombination rate | 0.0048 | 1.15 | 0.0002 | 0.04 | 0.0019 | 0.27 |
| Male recombination rate | 0.0083 | 2.71 | 0.0046 | 2.91 | 0.0014 | 0.19 |
| Explained deviance | 10,790 | 24,947 | 6,639 | |||
| Residual deviance | 7,407 | 12,664 | 2,427 | |||
| na | 13,038 | 21,636 | 3,871 | |||
| AICb | 60,968 | 113,273 | 21,181 | |||
Dataset A contains no CpG islands (CGIs) or DNase I hypersensitive sites (DHSs)), dataset B contains DHSs but no CGIs, and dataset C contains both CGIs and DHSs. aSample size. bAkaike Information Criterion.