Table 7.
Comparison of the CpG transition rate between the X chromosome and the 22 autosomes
| CpG specific transition rate | CpG transition rate | |||
|---|---|---|---|---|
| Levels of the one-way ANOVA | Estimate | P-value | Estimate | P-value |
| Intercept | -0.0708 | 1.04e-03** | -0.1730 | 6.82e-15*** |
| Chromosome 1 | 0.0638 | 1.58e-02* | 0.1531 | 1.83e-08*** |
| Chromosome 2 | 0.0565 | 3.32e-02* | 0.1567 | 9.46e-09*** |
| Chromosome 3 | 0.0870 | 1.21e-03** | 0.1809 | 5.97e-11*** |
| Chromosome 4 | 0.0644 | 2.46e-02* | 0.1759 | 2.37e-09*** |
| Chromosome 5 | 0.0437 | 1.20e-01 | 0.1374 | 2.03e-06*** |
| Chromosome 6 | 0.0579 | 4.94e-02* | 0.1666 | 3.86e-08*** |
| Chromosome 7 | 0.0330 | 2.97e-01 | 0.1293 | 6.84e-05*** |
| Chromosome 8 | -0.0036 | 9.08e-01 | 0.1382 | 1.53e-05*** |
| Chromosome 9 | 0.0942 | 2.71e-03** | 0.1890 | 4.94e-09*** |
| Chromosome 10 | 0.0871 | 2.95e-03** | 0.1864 | 6.22e-10*** |
| Chromosome 11 | 0.0988 | 1.44e-03** | 0.1911 | 2.09e-09*** |
| Chromosome 12 | 0.0555 | 6.11e-02 | 0.1345 | 1.03e-05*** |
| Chromosome 13 | 0.0625 | 8.53e-02 | 0.1501 | 5.88e-05*** |
| Chromosome 14 | 0.0005 | 8.88e-01 | 0.0900 | 9.89e-03** |
| Chromosome 15 | 0.0333 | 9.87e-01 | 0.1376 | 2.74e-05*** |
| Chromosome 16 | 0.0630 | 1.13e-01 | 0.1707 | 2.92e-05*** |
| Chromosome 17 | -0.0011 | 9.74e-01 | 0.1144 | 1.33e-03** |
| Chromosome 18 | 0.0862 | 1.92e-02* | 0.1901 | 5.02e-07*** |
| Chromosome 19 | -0.0118 | 8.68e-01 | 0.1157 | 1.15e-01 |
| Chromosome 20 | -0.0077 | 8.46e-01 | 0.0756 | 6.28e-02 |
| Chromosome 21 | 0.1033 | 5.49e-02 | 0.2319 | 2.76e-05*** |
| Chromosome 22 | 0.0288 | 6.00e-01 | 0.1228 | 2.99e-02* |
CpG-specific transition rate is corrected for among-chromosomes variation in divergence, GC content, DNA methylation and transcription level; CpG transition rate is only corrected for variation in GC content, DNA methylation and transcription level among chromosomes. Estimates and P-values of a one-way ANOVA are listed, where the contrasts are based on the X chromosome. P-values are marked with asterisks to highlight their significance level, where single, double and triple asterisks indicate P-values below a threshold of 0.05, 0.01 and 0.001, respectively.