Table 3.
Hae III- and Msp I-generated T-RFs that contribute to 90% of the fecal microbiota in healthy controls but not D-IBS patients
| Feces |
|||||
|---|---|---|---|---|---|
| Healthy Controls |
D-IBS Patients |
||||
| %Contribution | %Positive | %Contribution | %Positive | Predicted Bacterial Group | |
| Hae III T-RFs | |||||
| 5′ FAM-316 | 2.4 | 95.4 | NC | 100 | Clostridiales |
| 5′ FAM-297 | 1.2 | 91.3 | NC | 84.6 | Cyanobacteria, Synergistaceae, Planctomycetaceae, Sphingomonadaceae |
| 5′ FAM-221 | 1.2 | 82.6 | NC | 69.2 | Ktedonobacteraceae, Burkholderiales, Xanthomonadales, Planctomycetaceae |
| 3′ HEX-218 | 0.9 | 69.6 | NC | 76.9 | Acidimicrobidae, Anaerolineaceae, Lachnospiraceae, Planctomycetaceae, Verrucomicrobiaceae |
| Msp I T-RFs | |||||
| 5′ FAM-478 | 0.7 | 62.5 | NC | 71.4 | Cytophagaceae, Chromatiaceae |
| 5′ FAM-221 | 1.0 | 79.2 | NC | 85.7 | Clostridiales |
| 5′ FAM-67 | 0.8 | 70.8 | NC | 57.1 | Acidimicrobineae, Actinomycetales, Solirubrobacterales, Ruminococcaceae, Planctomycetaceae, Rhodospirillales, Comamonadaceae |
| 3′ HEX-84 | 2.9 | 95.8 | NC | 92.8 | Actinomycetales |
| 3′ HEX-68 | 1.6 | 87.5 | NC | 57.1 | Desulfobacteraceae |
Underlined bacterial groups are those consistently identified by T-RFs generated from Hae III, Hha I, or Msp I that contributed 90% of microbiota in healthy controls but not D-IBS patients.