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. 2011 Nov 18;6(11):e27371. doi: 10.1371/journal.pone.0027371

Table 2. Average distance-based RMSD values between the bound-state conformation and the MD structures.

System	C α (Å) ± sdev	Backbone^a (Å) ± sdev	All-atom (Å) ± sdev
16-mer ProTα peptide	1.17 ± 0.48	1.13 ± 0.40	2.47 ± 0.62
9-mer Neh2 peptide	1.02 ± 0.66	1.03 ± 0.59	1.73 ± 0.68
Full-length ProTα^b	0.34 ± 0.12	0.44 ± 0.12	1.82 ± 0.25
32-mer Neh2 peptide^b	0.18 ± 0.08	0.26 ± 0.07	0.85 ± 0.12

^a

Backbone atoms include N, C α and C.

^b

The last 0.1 µs of the trajectory was used in the RMSD calculations.