Table 2.
GO functional categorization of PFAM domain-containing soybean genes differentially regulated in the BLP-resistant NIL
| Category | Up-regulation |
Down-regulation |
||
|---|---|---|---|---|
| Number of genes | Proportion (%) | Number of genes | Proportion (%) | |
| Biological process | ||||
| Biological regulation | 197 | 17.10 | 44 | 13.50 |
| Carbon utilization | 3 | 0.26 | 0 | 0.00 |
| Cell proliferation | 1 | 0.09 | 0 | 0.00 |
| Cell wall organization or biogenesis | 10 | 0.87 | 6 | 1.84 |
| Cellular component organization | 10 | 0.87 | 1 | 0.31 |
| Cellular process | 69 | 5.99 | 22 | 6.75 |
| Developmental process | 2 | 0.17 | 0 | 0.00 |
| Establishment of localization | 110 | 9.55 | 26 | 7.98 |
| Metabolic process | 633 | 54.95 | 210 | 64.42 |
| Multicellular organismal process | 1 | 0.09 | 0 | 0.00 |
| Response to stimulus | 91 | 7.90 | 10 | 3.07 |
| Signalling process | 25 | 2.17 | 6 | 1.84 |
| Viral reproduction | 0 | 0.00 | 1 | 0.31 |
| Subtotal | 1152 | 100.00 | 326 | 100.00 |
| Cellular component | ||||
| Cell part | 212 | 68.17 | 62 | 59.05 |
| Extracellular region | 32 | 10.29 | 15 | 14.29 |
| Macromolecular complex | 32 | 10.29 | 5 | 4.76 |
| Organelle | 35 | 11.25 | 23 | 21.90 |
| Subtotal | 311 | 100.00 | 105 | 100.00 |
| Molecular function | ||||
| Antioxidant activity | 26 | 1.28 | 2 | 0.32 |
| Binding | 965 | 47.51 | 261 | 42.37 |
| Catalytic activity | 811 | 39.93 | 282 | 45.78 |
| Electron carrier activity | 70 | 3.45 | 27 | 4.38 |
| Enzyme regulator activity | 24 | 1.18 | 11 | 1.79 |
| Molecular transducer activity | 35 | 1.72 | 7 | 1.14 |
| Nutrient reservoir activity | 0 | 0.00 | 1 | 0.16 |
| Structural molecule activity | 5 | 0.25 | 2 | 0.32 |
| Transcription regulator activity | 34 | 1.67 | 6 | 0.97 |
| Transporter activity | 61 | 3.00 | 17 | 2.76 |
| Subtotal | 2031 | 100.00 | 616 | 100.00 |
| Total | 3494 | 1047 | ||