Table 6.
Performance of Localization Predictors Across 19 Proteins in Each of the 1990 Core Ortholog Groups
| Subcellular localization | Curated Localization1 | Cello 2.52 | SosiuGn | Subloc | PsortB 3.02 |
|---|---|---|---|---|---|
| extracellular | 40 | 7 (7)3 | 7 (7) | 24 (2) | 14 (11) |
| Outer Membrane | 32 | 16 (12) | 21 (12) | NA | 20 (14) |
| Periplasm | 176 | 25 (16) | 20 (18) | 72 (24) | 21 (20) |
| Inner Membrane | 403 | 222 (222) | 281 (278) | NA | 349 (294) |
| Cytoplasm | 1339 | 750 (737) | 780 (779) | 1277 (977) | 976 (970) |
| Total | 1990 | 1020 | 1109 | 1373 | 1380 |
1Lipoproteins localizing to the outer or inner membrane were counted as periplasmic, while those predicted to localize to the cell surface were counted as extracellular. T5SS autotransporters were counted as extracellular.
2Only Cello values for which a single location was predicted are included in these counts.
3Numbers in parentheses indicate the number of groups that are in agreement with curated locations.