Table 1.
Latent variables related to specific adaptation
| Latent variables | Related strains | Functions of selected enriched genes by ICA | |
|---|---|---|---|
| Up regulated | Down regulated | ||
| 2 | B12-4, B12-7 | Antibiotic resistance Iron metabolism Citronellol/leucine catabolism |
- |
| 4 | B6-0, B6-4 | LPS modification | Flagellum biogenesis |
| 16 | CF114-1973 | Fimbrial biogenesis | - |
| 20 | CF66-2008 | LPS modification | - |
| 22 | CF173-2002 | - | - |
| 14 | Early stage isolates from 1973 | Type III secretion | - |
| 6 | Late stage isolates | Antimicrobial peptide tolerance | - |
| 10 | Late stage isolates | Potassium uptake system | Quorum sensing |
| 18 | Late stage isolates | Alginate biosynthesis | Motilities |