Table 1.
Top GO Terms in breast cancer datasets
| gold standard (87 terms) | IGM (60 terms) | INTERSECTION (2 terms) | IGNORE (29 terms) | ||||
|---|---|---|---|---|---|---|---|
| GO Term | p-value | GO Term | p-value | GO Term | p-value | ||
| phosphoinositide-mediated signaling | 3.87E-14 | phosphoinositidemediated signaling | 1.24E-13 | phosphoinositide mediated signaling | 2.70E-03 | phosphoinositidemediated signaling | 2.44E-11 |
| mitotic chromosome condensation | 5.61E-13 | mitotic chromosome condensation | 2.14E-11 | mitotic chromosome condensation | 5.34E-03 | mitotic chromosome condensation | 1.47E-08 |
| DNA replication | 1.22E-08 | spindle organization | 1.48E-08 | regulation of cyclin-dependent protein kinase activity | 1.33E-02 | spindle organization | 1.91E-08 |
| spindle organization | 1.53E-08 | DNA replication | 1.53E-08 | DNA repair | 1.47E-02 | DNA replication | 4.13E-06 |
Top four GO terms that are over-represented in the set of significant probes generated by the gold standard, IGM, INTERSECTION and IGNORE methods in the breast cancer datasets.