Table 2.
Average Linkage Disequilibrium (r2) between adjacent SNP markers.
| POP1 (40 k) | POP2 (800 k) | ||||
|---|---|---|---|---|---|
| BTA |
Length (Mb) |
Number of SNP |
Average r2 (SD) |
Number of SNP |
Average r2 (SD) |
| 1 | 146 | 2712 | 0.25(0.25) | 47539 | 0.33(0.30) |
| 2 | 126 | 2205 | 0.25(0.25) | 38629 | 0.33(0.30) |
| 3 | 116 | 2060 | 0.24(0.25) | 38824 | 0.31(0.29) |
| 4 | 111 | 2011 | 0.23(0.24) | 37889 | 0.30(0.28) |
| 5 | 119 | 1749 | 0.24(0.24) | 32230 | 0.32(0.30) |
| 6 | 112 | 1962 | 0.26(0.26) | 38405 | 0.32(0.29) |
| 7 | 101 | 1687 | 0.25(0.26) | 33209 | 0.31(0.29) |
| 8 | 104 | 1748 | 0.24(0.25) | 33833 | 0.32(0.30) |
| 9 | 95 | 1369 | 0.26(0.26) | 30472 | 0.31(0.29) |
| 10 | 96 | 1413 | 0.27(0.26) | 30513 | 0.32(0.29) |
| 11 | 102 | 1551 | 0.25(0.25) | 33513 | 0.30(0.28) |
| 12 | 78 | 1070 | 0.24(0.26) | 23437 | 0.31(0.29) |
| 13 | 83 | 1249 | 0.25(0.25) | 27385 | 0.32(0.30) |
| 14 | 82 | 1290 | 0.25(0.25) | 27452 | 0.33(0.30) |
| 15 | 75 | 1081 | 0.27(0.27) | 22531 | 0.33(0.30) |
| 16 | 73 | 1150 | 0.24(0.25) | 22891 | 0.33(0.30) |
| 17 | 70 | 1195 | 0.27(0.26) | 23281 | 0.31(0.29) |
| 18 | 63 | 987 | 0.23(0.23) | 19391 | 0.32(0.29) |
| 19 | 63 | 966 | 0.25(0.26) | 20719 | 0.31(0.29) |
| 20 | 68 | 1133 | 0.24(0.24) | 21775 | 0.35(0.31) |
| 21 | 63 | 1032 | 0.25(0.26) | 19720 | 0.32(0.30) |
| 22 | 60 | 946 | 0.26(0.26) | 19212 | 0.31(0.29) |
| 23 | 49 | 772 | 0.25(0.26) | 15958 | 0.31(0.29) |
| 24 | 60 | 901 | 0.24(0.24) | 18087 | 0.32(0.30) |
| 25 | 42 | 749 | 0.25(0.25) | 14861 | 0.31(0.29) |
| 26 | 48 | 840 | 0.25(0.26) | 15999 | 0.30(0.30) |
| 27 | 43 | 670 | 0.26(0.26) | 13563 | 0.32(0.30) |
| 28 | 40 | 704 | 0.25(0.26) | 13407 | 0.32(0.30) |
| 29 | 45 | 806 | 0.26(0.26) | 14420 | 0.33(0.30) |
| Overall | 2333 | 38008 | 0.25(0.26) | 749145 | 0.32(0.30) |
The results are for each of the 29 autosomes in the recent generations for moderate heritability (0.25) and POP1 (40 k) and POP2 (800 k) over 10 replicates. SD: Standard Deviation.