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. Author manuscript; available in PMC: 2012 Dec 1.
Published in final edited form as: Mol Genet Metab. 2011 Aug 24;104(4):457–469. doi: 10.1016/j.ymgme.2011.08.019

Table 2.

Nucleotide Diversity.

Region Tajima’s D Heterozygosity (π) ± SE Length (bp) GC Content AT Content Number of SNPs Within Each Region Number of Singletons in this Region
5′FR 0.512 0.0008 ± 0.0006 1045 59% 41% 4 2
5′UTR according to mRNA BC042605.1 −0.96 0.00003 ± 0.00003 297 60% 40% 2 1
Intron 1A −0.58 0.0006 ± 0.0003 7959 52% 48% 40 16
Intron 2A −0.28 0.0006 ± 0.0003 31390 46% 54% 133 63
5′UTR according to mRNA NM_004117.2 ND ND 153 73% 27% 0 0
Coding region −1.09 0.00005 ± 0.0001 1374 45% 55% 2 1
Intron 1 −1.44 0.0003 ± 0.0001 45960 39% 61% 159 82
Intron 2 −1.37 0.0004 ± 0.0002 5561 39% 61% 27 13
Intron 3 −1.87 0.0002 ± 0.0001 16739 40% 60% 70 33
Intron 4 −1.29 0.00002 ± 0.00009 921 37% 63% 2 2
Intron 5 −1.81 0.0003 ± 0.0001 21691 40% 60% 97 50
Intron 6 −1.85 0.0002 ± 0.0001 6027 41% 59% 27 17
Intron 7 −1.65 0.0001 ± 0.0001 4012 43% 57% 13 8
Intron 8 −2.25 0.0002 ± 0.0001 6812 41% 59% 39 25
Intron 9 −2.04 0.00008 ± 0.0001 2802 39% 61% 10 7
Intron 10 −1.44 0.0001 ± 0.0002 1051 48% 52% 4 2
3′UTR −1.64 0.0003 ± 0.0003 2245 40% 60% 14 10
3′FR −0.13 0.0006 ± 0.0005 938 42% 58% 4 2

N.D. stands for “not-determined” Loci which did not conform to HWE were not included in the calculations.