Table 2.
Nucleotide Diversity.
| Region | Tajima’s D | Heterozygosity (π) ± SE | Length (bp) | GC Content | AT Content | Number of SNPs Within Each Region | Number of Singletons in this Region |
|---|---|---|---|---|---|---|---|
| 5′FR | 0.512 | 0.0008 ± 0.0006 | 1045 | 59% | 41% | 4 | 2 |
| 5′UTR according to mRNA BC042605.1 | −0.96 | 0.00003 ± 0.00003 | 297 | 60% | 40% | 2 | 1 |
| Intron 1A | −0.58 | 0.0006 ± 0.0003 | 7959 | 52% | 48% | 40 | 16 |
| Intron 2A | −0.28 | 0.0006 ± 0.0003 | 31390 | 46% | 54% | 133 | 63 |
| 5′UTR according to mRNA NM_004117.2 | ND | ND | 153 | 73% | 27% | 0 | 0 |
| Coding region | −1.09 | 0.00005 ± 0.0001 | 1374 | 45% | 55% | 2 | 1 |
| Intron 1 | −1.44 | 0.0003 ± 0.0001 | 45960 | 39% | 61% | 159 | 82 |
| Intron 2 | −1.37 | 0.0004 ± 0.0002 | 5561 | 39% | 61% | 27 | 13 |
| Intron 3 | −1.87 | 0.0002 ± 0.0001 | 16739 | 40% | 60% | 70 | 33 |
| Intron 4 | −1.29 | 0.00002 ± 0.00009 | 921 | 37% | 63% | 2 | 2 |
| Intron 5 | −1.81 | 0.0003 ± 0.0001 | 21691 | 40% | 60% | 97 | 50 |
| Intron 6 | −1.85 | 0.0002 ± 0.0001 | 6027 | 41% | 59% | 27 | 17 |
| Intron 7 | −1.65 | 0.0001 ± 0.0001 | 4012 | 43% | 57% | 13 | 8 |
| Intron 8 | −2.25 | 0.0002 ± 0.0001 | 6812 | 41% | 59% | 39 | 25 |
| Intron 9 | −2.04 | 0.00008 ± 0.0001 | 2802 | 39% | 61% | 10 | 7 |
| Intron 10 | −1.44 | 0.0001 ± 0.0002 | 1051 | 48% | 52% | 4 | 2 |
| 3′UTR | −1.64 | 0.0003 ± 0.0003 | 2245 | 40% | 60% | 14 | 10 |
| 3′FR | −0.13 | 0.0006 ± 0.0005 | 938 | 42% | 58% | 4 | 2 |
N.D. stands for “not-determined” Loci which did not conform to HWE were not included in the calculations.