Skip to main content
. 2011 Feb 1;11:9. doi: 10.1186/1472-6807-11-9

Table 2.

Percentage of secondary structures affected by the preferential distribution

Dataset Interface Surface Core All
α-letters
Complete 2% 3% 4% 3%
Homodimers/Heterodimers 5%/3% 4%/5% 6%/6% 5%/5%
Obligate/Transient 9%/4% 4%/4% 4%/5% 4%/4%
Ubound/Bound 9%/9% 5%/2% 9%/6% 7%/4%

β-letters
Complete 10% 35% 17% 23%
Homodimers/Heterodimers 12%/11% 17%/12% 17%/17% 16%/14%
Obligate/Transient 10%/18% 20%/10% 18%/15% 18%/13%
Ubound/Bound 17%/17% 15%/14% 17%/18% 16%/16%

loop-letters
Complete 7% 10% 29% 14%
Homodimers/Heterodimers 8%/6% 9%/8% 29%/36% 13%/12%
Obligate/Transient 7%/11% 9%/8% 23%/30% 12%/13%
Ubound/Bound 12%/12% 11%/11% 38%/38% 17%/16%

border-letters
Complete 2% 5% 16% 7%
Homodimers/Heterodimers 3%/4% 6%/4% 17%/8% 8%/4%
Obligate/Transient 4%/10% 7%/3% 17%/6% 9%/5%
Ubound/Bound 12%/7% 5%/5% 13%/14% 7%/7%

The percentage of secondary structure affected by the preferential distribution is evaluated in the Interface, Surface and Core compartments using the difference between the observed number of the structural letters in a compartment and its expected number (given the repartition of the secondary structures type in the three compartments). The total effect (All) is evaluated according to the sum of the difference in the three compartments. The evaluation is performed on the seven datasets.