Table 2.
Meta-analysis, top findings in whites and follow-up in the German AFNET and in African Americans
Locus | CARe Whites | AFNET | CARe African Americans | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP nearby gene | Chromo-some position | Effect allele | EAF,† range | Beta±SE | RR, 95% CI | P value | EAF | Beta±SE | OR, 95% CI | P value | EAF, range | Beta±SE | HR, 95% CI | P value |
rs2200733 PITX2 | 4 111929618 | C | 0.87–0.89 | −0.33±0.04 | 0.72 0.66–0.78 | 2.5×10−16 | -- | -- | -- | -- | 0.78–0.81 | −0.31±0.10 | 0.73 0.60–0.89 | 0.0018 |
rs198358 NPPA | 1 11826663 | C | 0.22–0.24 | −0.15±0.03 | 1.16 1.09–1.25 | 0.000012 | 0.25 | −0.14±0.13 | 0.87 0.67–1.13 | 0.26 | 0.52–0.52 | −0.05±0.09 | 0.95 0.80–1.13 | 0.56 |
rs2066470 MTHFR | 1 11785644 | A | 0.08–0.10 | 0.18±0.05 | 1.20 1.09–1.31 | 0.00014 | 0.11 | −0.31±0.18 | 0.73 0.51–1.05 | 0.10 | 0.07–0.08 | 0.05±0.17 | 1.05 0.76–1.45 | 0.76 |
rs4845625 IL6R | 1 152688691 | C | 0.57–0.58 | −0.11±0.03 | 0.90 0.85–0.95 | 0.00048 | 0.53 | –0.07±0.03 | 0.71 0.57–0.89 | 0.003 | 0.69–0.70 | −0.15±0.09 | 0.86 0.72–1.03 | 0.09 |
rs5997788 OSBP2 | 22 29585029 | G | 0.48–0.51 | −0.14±0.03 | 0.87 0.82–0.92 | 3.3×10−6 | 0.48 | −0.005±0.12 | 1.00 0.79–1.25 | 0.97 | 0.61–0.61 | 0.08±0.09 | 1.08 0.90–1.29 | 0.39 |
rs361557 TUBA8 | 22 16991223 | A | 0.81 | 0.15±0.04 | 1.16 1.08–1.26 | 0.00014 | 0.81 | 0.17±0.15 | 1.19 0.89–1.59 | 0.22 | 0.21–0.25 | 0.25±0.10 | 1.29 1.06–1.57 | 0.01 |
rs4586205 DRD2 | 11 112812339 | G | 0.23–0.25 | 0.14±0.03 | 1.15 1.08–1.23 | 4.5×10−5 | 0.25 | −0.01±0.13 | 0.99 0.76–1.27 | >0.99 | 0.64–0.65 | 0.10±0.09 | 1.10 0.92–1.33 | 0.29 |
rs998422 SLC2A10 | 20 44792815 | A | 0.57–0.59 | 0.11±0.03 | 1.11 1.05–1.18 | 0.0005 | 0.42 | −0.24±0.11 | 0.79 0.63–0.98 | 0.03 | 0.83–0.84 | −0.02±0.12 | 0.98 0.78–1.23 | 0.83 |
The abbreviations are as follows: AA, African Americans; EAF, Effect allele frequency; OR, odds ratio; RR, relative risk, SE, standard error; SNP, single nucleotide polymorphism.
Range of EAFs across cohorts. Analyses were modeled for the alleles in alphabetical order. The effect allele was the allele earlier in the alphabet.