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. Author manuscript; available in PMC: 2012 Oct 1.
Published in final edited form as: Atherosclerosis. 2011 Jul 20;218(2):451–456. doi: 10.1016/j.atherosclerosis.2011.07.007

Table 3.

Candidate genes and validations. The score column lists log-scores of association for each locus, adjusted for testing of multiple SNPs within each locus. Scores greater than 1.3 (n=31, p<0.05) are shown. Scores 2.8 or greater indicate statistically significant associations after Bonferroni-adjustment for testing of multiple genes (highlighted and bold).

Group Chr Symbol SNP Id Score gene

Serotonin receptors (20) 11 HTR3B rs1176746 Ns 5-hydroxytryptamine (serotonin) receptor 3B
10 HTR7 rs11596518 Ns 5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)

Pharmacokinetic(21) 12 SLCO1B1 rs7959887 Ns solute carrier organic anion transporter family, member 1B1

Vascular genes (7) 3 AGTR1 rs1492099 Ns angiotensin II receptor, type 1
7 NOS3 rs1800779 1.4 nitric oxide synthase 3 (endothelial cell)

Fuel processing and energy transfer (19,24) 11 PYGM rs625172 2.0 phosphorylase, glycogen, muscle
17 ACE rs4344 Ns angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
17 GAA rs2304836 Ns glucosidase, alpha; acid
11 CPT1A rs2924674 Ns carnitine palmitoyltransferase 1A (liver)
22 CPT1B rs7238 Ns carnitine palmitoyltransferase 1B (muscle)
1 CPT2 rs1288335 Ns carnitine palmitoyltransferase II
1 AMPD1 rs2268699 Ns adenosine monophosphate deaminase 1 (isoform M)
4 COQ2 rs4693570 4.4 para-hydroxybenzoate-polyprenyltransferase
9 APTX rs10813916 Ns aprataxin

Diseases (muscular dystrophy, rippling muscle disease) (19, 24) X DMD rs5935419 Ns dystrophin
18 AQP4 rs151251 Ns aquaporin 4
19 DMPK rs672348 2.8 dystrophia myotonica-protein kinase
8 FAM82B rs1542081 Ns family with sequence similarity 82, member B
3 CAV3 rs11916022 Ns caveolin 3

Calcium transport (19) 12 ATP2B1 rs17381194 3.1 ATPase, Ca++ transporting, plasma membrane 1
16 ATP2A1 rs205356 Ns ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
17 ATP2A3 rs758641 Ns ATPase, Ca++ transporting, ubiquitous
19 RYR1 rs2960336 Ns ryanodine receptor 1 (skeletal)
1 RYR2 rs10925416 Ns ryanodine receptor 2 (cardiac)
3 ATP2B2 rs6442177 1.5 ATPase, Ca++ transporting, plasma membrane 2
3 ATP2C1 rs218492 1.5 ATPase, Ca++ transporting, type 2C, member 1
7 RYR3 rs6460575 1.7 ryanodine receptor 3
X ATP2B3 rs2269414 Ns ATPase, Ca++ transporting, plasma membrane 3
16 ATP2C2 rs247808 Ns ATPase, Ca++ transporting, type 2C, member 2
12 ATP2A2 rs17187412 Ns ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
1 ATP2B4 rs3753036 1.8 ATPase, Ca++ transporting, plasma membrane 4