Table 2. Sequence and length polymorphisms for known miRNAs in O. europaea.
miRNA family | Sequence (5′-3′) | Size | Juvenile | Adult |
miR156/157 | UUGACAGAAGAUAGAGAGCGC | 21 | N | 1 |
miR159 | UUUGGAUUGAAGGGAGCUCUA | 21 | 109 | 4 |
UUCGGAUUGAAGGGAGCUCUA | 21 | 1 | 0 | |
UUUGGAUUGAAGGUAGCUCUA | 21 | 1 | 0 | |
UUGGUAUUGAAGGGAGCUCUA | 21 | 1 | 0 | |
UUUGGAUUGAAGGGAGCUUUA | 21 | 2 | 0 | |
UUUUGGAUUGAAGGGAGCUCUA | 22 | 1 | 0 | |
CUUUGGAUUGAAGGGAGCUCUA | 22 | 1 | 0 | |
UUUGGAUUGAAGGGAGCUCUAA | 22 | 1 | 0 | |
UUUGGAUUGAAGGGAGCUCU | 20 | 4 | 0 | |
UUGGAUUGAAGGGAGCUCUA | 20 | 3 | 0 | |
UUUGGAUUGAAGGGAGCU | 18 | 8 | 0 | |
miR160 | UGCCUGGCUCCCUGUAUGCCA | 21 | 3 | 2 |
miR164 | UGGAGAAGCAGGGCACGUGCA | 21 | 8 | 1 |
UGGAGAAGCAGGGUACGUGGA | 21 | 2 | 0 | |
UGGAGAAGCAUGGCACGUGCA | 21 | 1 | 0 | |
miR166 | UCGGACCAGGCUUCAUUCCCC | 21 | 1 | 0 |
UCGGACCAGGCUUCAUUCCUC | 21 | 2 | 0 | |
UCUCGGACCAGGCUUCAUUCC | 21 | 1 | 0 | |
UCGGACCAGGCUUCAUUCC | 19 | 0 | 1 | |
UCGGACCAGGCUUCGUUC | 18 | 0 | 2 | |
miR166* | GGAAUGUUGGCUGGCUCGAGG | 21 | 1 | 0 |
GGAAUGUUGUCUGGCUCGAGG | 21 | 0 | 1 | |
GGAAUGUUGGCUGGCUCGAGGC | 22 | 1 | 2 | |
miR167 | UGAAGCUGCCAGCAUGAUCUA | 21 | 2 | 1 |
UGAAGCUGCCAGCGUGAUCUA | 21 | 1 | 0 | |
UGAAGCUGCCAGCAUGAUCUGG | 22 | 2 | 0 | |
UGAAGCUGCCAGCAUGAUC | 19 | 13 | 1 | |
UAAAGCUGCCAGCAUGAU | 18 | 1 | 0 | |
miR168 | UCGCUUGGUGCAGGUCGGGAA | 21 | 7 | 1 |
CGCUUGGUGCAGGUCGGGAAC | 21 | 1 | 0 | |
miR168* | CCCGCCUUGCAUCAACUGAAU | 21 | 1 | 0 |
miR171 | UGAUUGAGCCGUGCCAAUAUC | 21 | 1 | 0 |
miR172 | AGAAUCUUGAUGAUGCUGCAU | 21 | 1 | 0 |
AGAAUCCUGAUGAUGCUGCAU | 21 | 1 | 0 | |
miR390 | AAGCUCAGGAGGGAUAGCGCC | 21 | 0 | 1 |
AGCUCAGGAGGGAUAGCGCC | 20 | 2 | 0 | |
miR396 | UUCCACAGCUUUCUUGAA | 18 | 4 | 0 |
miR396* | GUUCAAGAAAGCUGUGGGACA | 21 | 1 | 0 |
miR482 | UCUUACCAAUGCCUCCCAUCCC | 22 | 1 | 0 |
UUUCCUAUUCCUCCCAUACCGA | 22 | 0 | 2 | |
miR845 | AGGCUUUGAUACCACUUG | 19 | 2 | 0 |
miR858 | UUCGUUGUCUGUUCGACCUUA | 21 | 3 | 1 |
miR894 | UGUUUCACGUCGGGUUCACCA | 21 | 1 | 0 |
miR1310 | GAGGCAUCGGGGGCGCAA | 18 | 1 | 0 |
miR2911 | GCGGCCGGGGGACGGACUGGG | 21 | 1 | 0 |
CUGGCCGGGGGACGGACUGGGA | 22 | 1 | 0 | |
GUGGCCGGGGGACGGACUGGGA | 22 | 1 | 0 | |
UCGGCCGGGGGACGGACUGGGA | 22 | 0 | 1 | |
GCCGGGGGACGGACUUGGA | 19 | 2 | 0 | |
miR4342 | CUAAGGAUGUAGGGUGGU | 18 | 1 | 0 |
The number of times a sequence was sampled in juvenile and adult shoots is indicated. (N) denotes miRNAs detected by Northern blot hybridization using sequence-specific probes. Up to three mismatches were allowed with respect to the canonical miRBase sequence.