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. 2011 Nov 28;6(11):e27916. doi: 10.1371/journal.pone.0027916

Table 2. Sequence and length polymorphisms for known miRNAs in O. europaea.

miRNA family Sequence (5′-3′) Size Juvenile Adult
miR156/157 UUGACAGAAGAUAGAGAGCGC 21 N 1
miR159 UUUGGAUUGAAGGGAGCUCUA 21 109 4
UUCGGAUUGAAGGGAGCUCUA 21 1 0
UUUGGAUUGAAGGUAGCUCUA 21 1 0
UUGGUAUUGAAGGGAGCUCUA 21 1 0
UUUGGAUUGAAGGGAGCUUUA 21 2 0
UUUUGGAUUGAAGGGAGCUCUA 22 1 0
CUUUGGAUUGAAGGGAGCUCUA 22 1 0
UUUGGAUUGAAGGGAGCUCUAA 22 1 0
UUUGGAUUGAAGGGAGCUCU 20 4 0
UUGGAUUGAAGGGAGCUCUA 20 3 0
UUUGGAUUGAAGGGAGCU 18 8 0
miR160 UGCCUGGCUCCCUGUAUGCCA 21 3 2
miR164 UGGAGAAGCAGGGCACGUGCA 21 8 1
UGGAGAAGCAGGGUACGUGGA 21 2 0
UGGAGAAGCAUGGCACGUGCA 21 1 0
miR166 UCGGACCAGGCUUCAUUCCCC 21 1 0
UCGGACCAGGCUUCAUUCCUC 21 2 0
UCUCGGACCAGGCUUCAUUCC 21 1 0
UCGGACCAGGCUUCAUUCC 19 0 1
UCGGACCAGGCUUCGUUC 18 0 2
miR166* GGAAUGUUGGCUGGCUCGAGG 21 1 0
GGAAUGUUGUCUGGCUCGAGG 21 0 1
GGAAUGUUGGCUGGCUCGAGGC 22 1 2
miR167 UGAAGCUGCCAGCAUGAUCUA 21 2 1
UGAAGCUGCCAGCGUGAUCUA 21 1 0
UGAAGCUGCCAGCAUGAUCUGG 22 2 0
UGAAGCUGCCAGCAUGAUC 19 13 1
UAAAGCUGCCAGCAUGAU 18 1 0
miR168 UCGCUUGGUGCAGGUCGGGAA 21 7 1
CGCUUGGUGCAGGUCGGGAAC 21 1 0
miR168* CCCGCCUUGCAUCAACUGAAU 21 1 0
miR171 UGAUUGAGCCGUGCCAAUAUC 21 1 0
miR172 AGAAUCUUGAUGAUGCUGCAU 21 1 0
AGAAUCCUGAUGAUGCUGCAU 21 1 0
miR390 AAGCUCAGGAGGGAUAGCGCC 21 0 1
AGCUCAGGAGGGAUAGCGCC 20 2 0
miR396 UUCCACAGCUUUCUUGAA 18 4 0
miR396* GUUCAAGAAAGCUGUGGGACA 21 1 0
miR482 UCUUACCAAUGCCUCCCAUCCC 22 1 0
UUUCCUAUUCCUCCCAUACCGA 22 0 2
miR845 AGGCUUUGAUACCACUUG 19 2 0
miR858 UUCGUUGUCUGUUCGACCUUA 21 3 1
miR894 UGUUUCACGUCGGGUUCACCA 21 1 0
miR1310 GAGGCAUCGGGGGCGCAA 18 1 0
miR2911 GCGGCCGGGGGACGGACUGGG 21 1 0
CUGGCCGGGGGACGGACUGGGA 22 1 0
GUGGCCGGGGGACGGACUGGGA 22 1 0
UCGGCCGGGGGACGGACUGGGA 22 0 1
GCCGGGGGACGGACUUGGA 19 2 0
miR4342 CUAAGGAUGUAGGGUGGU 18 1 0

The number of times a sequence was sampled in juvenile and adult shoots is indicated. (N) denotes miRNAs detected by Northern blot hybridization using sequence-specific probes. Up to three mismatches were allowed with respect to the canonical miRBase sequence.