Table 1.

Average number of base, non-base and total haplotypes per locus across replicates, at different limits of clustering of base haplotypes and different window sizes

Haplotypes	Window size	Clustering limit base haplotypes
		0.55	0.75	0.95
Base	2	48.2	124.1	172.4
	6	7.6	35.8	101.9
	12	6.5	15.5	45.2
	20	6.2	14.0	33.7
Non base	2	170.5	288.6	338.5
	6	114.6	202.4	291.4
	12	126.8	186.2	253.9
	20	133.9	194.0	251.7
Total	2	218.7	412.7	510.9
	6	122.2	238.2	393.3
	12	133.3	201.7	299.1
	20	140.1	208.0	285.4