Table 2.
Summary of the species and genome resources used in the study
| Sample | Common Name | Name | Classification | Total transcripts | URL reference for genome |
|---|---|---|---|---|---|
| 1 | mushroom | Laccaria bicolor | Symbiotic fungus | 19,036 | http://genome.jgi-psf.org |
| 2 | microalgae | Ostreococcus tauri | Prasinophyte | 7725 | http://genome.jgi-psf.org |
| 3 | microalgae | Ostreococcus lucimarinus | Prasinophyte | 7,651 | http://genome.jgi-psf.org |
| 4 | microalgae | Ostreococcus RCC809 | Prasinophyte | 7773 | http://genome.jgi-psf.org |
| 5 | diatom | Phaeodactylum tricornutum | Bacillariophyte | 10025 | http://genome.jgi-psf.org |
| 6 | diatom | Thalassiosira pseudonana | Bacillariophyte | 11390 | http://genome.jgi-psf.org |
| 7 | green algae | Chlamydomonas reinhardtii | Chlorophyte | 14,598 | http://genome.jgi-psf.org |
| 8 | alga | Volvox carteri | Chlorophyte | 15,544 | http://genome.jgi-psf.org |
| 9 | moss | Physcomitrella patens | Bryophyte | 35938 | http://genome.jgi-psf.org |
| 10 | spike moss | Selaginella moellendorffii | Lycophytes | 34,697 | http://genome.jgi-psf.org |
| 11 | Sorghum | Sorghum bicolor | Monocot | 34496 | http://genome.jgi-psf.org |
| 12 | Arabidopsis | Arabidopsis thaliana | Dicot | 32016 | http://www.arabidopsis.org/ |
| 13 | Poplar | Populus trichocarpa | Dicot | 45555 | http://genome.jgi-psf.org |
| 14 | Rice | Oryza sativa | Monocot | 67,393 | http://rice.plantbiology.msu.edu/ |
| 15 | Medicago | Medicago truncatula | Dicot | 44830 | http://www.medicago.org/ |
| Total | 388,667 |