Table 5.
Annotation performance
| Tool | # Genes input | #Genes recognized | #Genes annotated | #Annotations retrieved |
|---|---|---|---|---|
| A. Test gene annotation set | ||||
| Onto-Express | 60 | 60 | 56 | 313 |
| EasyGO | 60 | 56 | 45 | 339 |
| GOstat | 60 | 60 | 56 | 303 |
| DAVID | 60 | 60 | 58 | 1662 |
| AgBase | 60 | 60 | 49 | 474 |
| B. Experimental chicken gene set | ||||
| Onto-Express | 31 | 29 | 24 | 328 |
| EasyGO | 31 | 31 | 21 | 104 |
| GOstat | 31 | 31 | 25 | 227 |
| DAVID | 31 | 26 | 26 | 615 |
| AgBase | 31 | 27 | 22 | 136 |
For each tool, the number of gene identifiers used as input, the number of genes recognized, the number of genes for which some GO annotation was retrieved, and the total number of annotations for all genes is given for both the Test Set and the Experimental Set.