. 2011 Jul 12;23(7):2738–2753. doi: 10.1105/tpc.111.086975

Table 1.

Induced Genes in ODO1 Overexpressing Fruits

Ratio	FDR	Unigene	Description	EC Number
3.94	0.004	SGN-U566921	DAHP synthase	2.5.1.54
4.77	0.009
2.13	0.005	SGN-U568781	Dehydroquinate synthase	4.2.1.10
2.43	0.015
1.93	0.017	SGN-U582040	Shikimate kinase	2.7.1.71
1.98	0.012
1.57	0.016	SGN-U580985	EPSP synthase	2.5.1.19
1.67	0.008
3.72	0.005	SGN-U580985	EPSP synthase	2.5.1.19
2.93	0.008
3.81	0.005	SGN-U577580	EPSP synthase	2.5.1.19
3.14	0.008
2.01	0.007	SGN-U563165	Chorismate synthase 1	4.2.3.5
2.27	0.034
5.44	0.005	SGN-U575627	Chorismate mutase	5.4.99.5
5.05	0.008
2.52	0.005	SGN-U567172	Putative Asp aminotransferase	*
2.29	0.008
1.73	0.007	SGN-U567390	Putative Asp aminotransferase	*
1.27	0.018
2.17	0.005	SGN-U573964	Arogenate/prephenate dehydratase	4.2.1.91
1.89	0.008
9.73	0.005	SGN-U583010	Arogenate/prephenate dehydratase	4.2.1.91
11.28	0.007
2.10	0.005	SGN-U562941	4-Coumarate–CoA ligase	6.2.1.12
2.40	0.008
7.29	0.004	SGN-U580976	4-Coumarate–CoA ligase	6.2.1.12
8.47	0.008
8.83	0.005	SGN-U577586	4-Coumarate–CoA ligase	6.2.1.12
9.93	0.008
15.16	0.005	SGN-U577586/SGN-U593064	4-Coumarate–CoA ligase	6.2.1.12
17.48	0.008
2.09	0.006	SGN-U580050/SGN-U580736	Phe ammonia-lyase	4.3.1.24
1.46*
5.79	0.008	SGN-U572140	Phe ammonia-lyase	4.3.1.24
6.56	0.008
6.74	0.004	SGN-U580612	Phe ammonia-lyase	4.3.1.24
7.83	0.008
9.05	0.005	SGN-U577677	Phe ammonia-lyase	4.3.1.24
11.58	0.008
11.45	0.004	SGN-U577267	Phe ammonialyase	4.3.1.24
18.14	0.008
11.55	0.006	SGN-U580050	Phe ammonia-lyase	4.3.1.24
7.83	0.008
11.74	0.004	SGN-U590436	Phe ammonia-lyase	4.3.1.24
13.43	0.008
13.78	0.004	SGN-U577677	Phe ammonia-lyase	4.3.1.24
16.09	0.007
3.83	0.006	SGN-U565006	Cinnamoyl-CoA reductase	1.2.1.44
4.69*	0.06
5.30	0.005	SGN-U578364/SGN-U578590	Caffeoyl-CoA O-methyltransferase	2.1.1.68
4.78	0.008
34.44	0.005	SGN-U581378	Caffeoyl-CoA O-methyltransferase	2.1.1.68
34.79	0.008
36.83	0.004	SGN-U590082	Caffeoyl-CoA O-methyltransferase	2.1.1.68
36.67	0.008
43.82	0.004	SGN-U577382/SGN-U577729	Caffeoyl-CoA O-methyltransferase	2.1.1.68
33.93	0.008
9.61	0.005	SGN-U581122/SGN-U581132	Cinnamic acid 4-hydroxylase	1.14.13.11
9.45	0.008
12.39	0.005	SGN-U581122/SGN-U581132	Cinnamic acid 4-hydroxylase	1.14.13.11
11.51	0.006
11.31	0.005	SGN-U565500/SGN-U587882	Tyramine N-feruloyltransferase	2.3.1.110
12.73	0.008
2.26	0.004	SGN-U578909/SGN-U579184	Tyramine N-feruloyltransferase	2.3.1.110
2.08	0.009
2.21	0.018	SGN-U586450/SGN-U586452	UDP-xylose phenolic glycosyltransferase	2.4.2.35
1.70	0.044
1.58	0.01	SGN-U562651/SGN-U562652	Hydroxycinnamoyl CoA quinate transferase	2.3.1.99
2.16	0.008
0.33	0.024	SGN-U580262	Chalcone synthase	2.3.1.74
0.72*	0.093

Ratios of transgenic to control RNAs for 7949 (top) and 8117 (bottom) as well as the false discovery rate (FDR) are indicated for each unigene. RNA was isolated from fruits at breaker plus 5 d. Asterisk indicates proteins with BLAST identities as Asp aminotransferases tested in this study.