Table 2.

Allelic configuration of genes associated with responses to vernalization and photoperiod in the genotypes selected for expression analysis

Vernalization and photoperiod genes
Genotype	VRNH1a	VRNH2b	VRNH3				PPDH1e	PPDH2f
			Promoterc			Intron 1d
			SNP927	Indel 1	Indel 2
Plaisant	vrnh1	VRNH2	C	139	142	TC	PPDH1	ppdH2
Rebelle	vrnh1	VRNH2	C	135	146	AG	PPDH1	ppdH2
Arlois	vrnh1	VRNH2	C	139	142	TC	PPDH1	PPDH2
Hispanic	vrnh1	VRNH2	C	135	146	AG	PPDH1	PPDH2
SBCC106	VRNH1-6	VRNH2	C	139	142	TC	PPDH1	PPDH2
SBCC016	VRNH1-6	VRNH2	C	139	142	AG	PPDH1	PPDH2
SBCC058	VRNH1-4	VRNH2	C	139	142	TC	PPDH1	PPDH2
SBCC114	VRNH1-4	VRNH2	C	139	142	AG	PPDH1	PPDH2

^a Alleles based on the size of intron 1 [12].

^b Presence/absence of HvZCCT [15].

^c Promoters identified previously [23].

^d Alleles based on two SNPs in intron 1, as reported previously [20].

^e Alleles based on SNP22 [25].

^f Presence/absence of PPDH2 [13].