Table 1.
Thermodynamic and spectroscopic parameters characterizing the binding of the E. coli PriB protein to etheuoderivatives of ssDNA oligomers in buffer C (pH 7.0, 10°C)*
| 14-mer | 16-mer | 18-mer | 20-mer | 24-mer | 26-mer | 30-mer | 35-mer | |
|---|---|---|---|---|---|---|---|---|
| dεA(pεA)13 | dεA(pεA)15 | dεA(pεA)17 | dεA(pεA)19 | dεA(pεA)23 | dεA(pεA)25 | dεA(pεA)29 | dεA(pεA)34 | |
| Stoichiometry | 1 ± 0.1 | 1 ± 0.1 | 1 ± 0.1 | 1 ± 0.1 | 2 ± 0.2 | 2 ± 0.2 | 2 ± 0.2 | 2 ± 0.2 |
| Site-size p | 12 | 12 | 12 | 12 | 12 | 12 | 12 | 12 |
| KN (M−1) | (5.2 ± 0.7) × 105 | (9.0 ± 1.3) × 105 | (1.3 ± 0.2) × 106 | (1.7 ± 0.2) × 106 | - | - | - | - |
| Ki (M−1) | (1.7 ± 0.2) × 105 | (1.8 ± 0.3) × 105 | (1.9 ± 0.3) × 105 | (1.9 ± 0.3) × 105 | (2.5 ± 0.4) × 105 | (2.8 ± 0.5) × 105 | (2.8 ±0.5) × 105 | (1.5 ±0.3) × 105 |
| ω | - | - | - | - | 50 ± 10 | 45 ± 10 | 45 ± 10 | 45 ± 10 |
| ΔF1 | - | - | - | - | 0.90 ± 0.03 | 0.80 ± 0.03 | 0.70 ± 0.03 | 0.9 ± 0.03 |
| ΔFmax | 0.77 ± 0.03 | 1.04 ± 0.03 | 1.19 ± 0.03 | 1.18 ± 0.03 | 1.32 ± 0.2 | 1.14 ± 0.03 | 1.22 ± 0.03 | 2.0 ± 0.05 |
The errors are standard deviations determined using 3–4 independent titration experiments.