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Estimated number of disease associated SNPs (y-axis) plotted against (a) the number of significant SNPs (>0.05 family-wise) and (b) the maximum single SNP chi-square statistics (x-axis) within a 100 kb neighborhood per disease locus. In (a), the number of loci in each box plot is further shown on the top. The plots are computed from 200 simulated data sets of disease Model 1.
