Table 1.
The functional elements detected by 7 tools*
| Dataset | Binding site | OCW | WeederH | PhyloGibbs | PhyloCon | AlignACE | GLAM2 | Weeder | Ref. |
|---|---|---|---|---|---|---|---|---|---|
| 1 | ABRE(ACGTGKC) | + | + | + | - | + | + | + | [18] |
| DRE(TACCGACAT) | + | - | - | + | + | + | - | [18] | |
| 2 | ARF(TGTCTC) | + | + | + | + | + | + | + | [19] |
| 3 | ARF(TGTCTC) | + | + | + | + | + | - | + | [19] |
| 4 | XBP1BS/P-UPRE/ERSEI(CCACGTCAT) | + | + | + | + | + | - | + | [20] |
| P-UPRE/ERSEI(ATTGGN9CCACG) | + | + | + | + | + | + | + | [20] | |
| 5 | G-box(CACGTG) | - | + | + | + | + | + | + | [21] |
| 6 | SAUR(CATATG) | + | + | - | - | - | + | + | [22] |
| 7 | ABRE3(CAACGTG) | + | + | + | - | - | + | - | [22] |
| extA(AACGTGT) | + | + | - | - | - | + | - | [22] |
* Only those elements already reported in literatures are listed. '+' indicates successful detection, '-' means failed detection.