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. Author manuscript; available in PMC: 2012 Apr 1.
Published in final edited form as: Nucleosides Nucleotides Nucleic Acids. 2011 Apr;30(4):271–279. doi: 10.1080/15257770.2011.580640

TABLE 1.

Mild removal of the 5’-O-DMTr group from the native and modified oligonucleotides (1–6) in Scheme 1a

Oligo
-entry
pH
b
t1/2c
(min)
Td
(min)
Yielde
(%)
1 5.0 6.5 45 99
2 5.0 10 60 99
3 4.5 9.4 60 98
4 4.5 8.6 60 98
5 5.0 11 60 98
6 4.5 7.8 60 97
a

All experiments were carried out at 40 °C (± 1 °C);

b

pH measurement error (σ = ± 0.04);

c

the half-life time for the DMTr removal: it was calculated from the following equation t1/2 = ln (0.5) / ln (%DMTr-on/100) × t;

d

the reaction time of detritylation reaction;

e

the yields of the generated DMTr-off oligonucleotides (confirmed by MS analysis), which were measured via the peak area.