TABLE 1.
Mild removal of the 5’-O-DMTr group from the native and modified oligonucleotides (1–6) in Scheme 1a
Oligo -entry |
pH b |
t1/2c (min) |
Td (min) |
Yielde (%) |
---|---|---|---|---|
1 | 5.0 | 6.5 | 45 | 99 |
2 | 5.0 | 10 | 60 | 99 |
3 | 4.5 | 9.4 | 60 | 98 |
4 | 4.5 | 8.6 | 60 | 98 |
5 | 5.0 | 11 | 60 | 98 |
6 | 4.5 | 7.8 | 60 | 97 |
All experiments were carried out at 40 °C (± 1 °C);
pH measurement error (σ = ± 0.04);
the half-life time for the DMTr removal: it was calculated from the following equation t1/2 = ln (0.5) / ln (%DMTr-on/100) × t;
the reaction time of detritylation reaction;
the yields of the generated DMTr-off oligonucleotides (confirmed by MS analysis), which were measured via the peak area.