Table 1.
Semantic type | Resources | Semantic type | Resources |
Cell | Cell ontology | Nucleic Acid Region | Sequence Ontology (Region) |
Cell Component | Gene Ontology (GO:0005575 cellular component) | Operon | RegulonDB, ODB |
Chemical | CHEBI (IMR:0000947 chemical) | Organism | NCBI Species |
Disease | OMIM | Transcription Factor-Binding-Site | Sequence Ontology |
Enzyme | Enzyme Nomenclature | Protein | BioThesaurus |
Gene | BioThesaurus | Protein Complex | Corum database |
Ligand | IMR - INOH Protein name/family name ontology |
Protein Domain | InterPro |
Nuclear Receptor | Gene ontology (GO:0004879 ligand-dependent nuclear receptor activity) |
Transcription Regulator | RegulonDB, TransFac, Gene Ontology Annotation |
Each semantic type included in the BioLexicon is shown, together with resource(s) from which it has been extracted. In the case of large resources containing several types of terms (e.g., the Gene Ontology), the exact category of the extracted terms within the source resource is shown, together with an identifier for that category, if available.