Table 2.

Determination of inferred putative recombination events and their frequency along the sequences of the entire genome of aureusviruses, one avenavirus and carmoviruses. Algorithm RDP v3.31β showed that only events supported by more than half of the different methods are reported. Nucleotide numbering corresponds to the aligned sequences. Abbreviations: NRS: -number of recombination sites, GIRE: -genomic interval of recombination events (the span of sequences in the viral genome where recombination events were predicted).

	Recombination determined by RECCO							Recombination determined by RDP v3.31β
Virus.isolate	NRS	GIRE (nt)	Length of breakpoint				Genomic position of the longest breakpoint (size in nucleotide)	Putative parental (Major × Minor)
			1 residue	2 residues	3 residues	> 3 residues
PoLV.Pigeonpea	33	607–5320	10	8	3	12	2148–2184 (37)	OCSV × MeNSV/MNSV-264 CarRSV RNA 1 × MeNSV-Tottori CarRSV RNA 1 × MeNSV-Kochi 2
JCSMV.Iran	28	2457–5288	11	6	3	8	3790–3802 (13)	CarRSV RNA 1 × MeNSV-Tottori CarRSV RNA 1 × MeNSV-Kochi 2
MaWLMV.USA	28	3212–4043	18	3	1	6	3836–3853 (18)	OCSV × MeNSV/MNSV-264 CarRSV RNA 1 × MeNSV-Tottori
OCSV	175	766–5052	65	33	23	54	1295–1306 (12) 5036–5047 (12)	TCV.UK × MaWLMV.USA
CCFV	20	894–4681	7	2	3	8	1896–1908 (13)	/
CarMoV	5	1349–2124	0	0	1	4	1986–2045 (60)	/
CPMoV	14	1316–3143	4	6	2	2	2850–2854 (5)	/
JINRSV	134	689–5098	58	30	20	26	1736–1760 (25)	/
MeNSV.Nagasaki	2	623–4892	0	0	0	2	4847–4892 (46)	/
MeNSV.Kochi	4	1843–4694	1	0	0	3	3866–3907 (42)	/
MeNSV.MNSV-Al	3	619–4908	0	0	0	3	4864–4908 (45)	/
MeNSV.MNSV-264	5	4940–5131	3	0	2	0	4952–4954 (3) 5129–5131 (3)	/
MeNSV.NK	2	615–4908	0	1	0	1	615–874 (60)	SYMoMV/MS1-USA × TBSV.Statice
MeNSV.NH	5	615–4983	1	1	0	3	2070–2151 (82)	YMoMV/MS1-USA × TBSV.Statice
MeNSV.Malfa5	13	677–4831	0	0	2	11	1736–1796 (61)	/
PSNV.Japan	80	645–5174	34	15	9	22	4225–4266 (42)	/
SCV	61	665–4506	28	6	13	14	1887–1898 (12) 2761–2772 (12)	/
AFBV.Florida	87	665–5046	34	15	15	23	2151–2166 (16)	/