. Author manuscript; available in PMC: 2013 Jan 5.

Published in final edited form as: Virology. 2011 Oct 30;422(1):59–69. doi: 10.1016/j.virol.2011.09.033

Table 1.

Sequencing results of the DNA bands obtained from 5'/3' RACE and RT-PCR

Lane	Analysis	Primers^*	Bands	Identified transcripts^*
1	5' RACE	d(G)16-R nt960	a	P6 nt262-960
2	5' RACE	d(G)16-R nt3840	a	P38 nt1950-2060Δ2309-2367Δ3329-3840
2	5' RACE	d(G)16-R nt3840	b	P38 nt1950-2013Δ3329-3840
3	RT-PCR	F nt283-R nt2060	a	P6 nt283-2060
3	RT-PCR	F nt283-R nt2060	b	P6 nt283-418Δ1630-2060
4	RT-PCR	F nt1441-R nt2354	a	non-specific
			b	P6 nt1441-2354
			c	P6 nt1441-2060Δ2309-2354
5	5' RACE	d(T)18V-R nt3440	a	P38 nt1950-2060Δ2309-2367Δ3329-3440
			b	P38 nt1950-2013Δ3329-3440
			c	Primer dimers
6	RT-PCR	F nt283-R nt3440	a	P6 nt283-2060Δ2309-2367Δ3329-3440
			b	P6 nt283-418Δ1630-2060Δ2309-2367Δ3329-3440
			c	P6 nt283-418Δ1630-2013Δ3329-3440
			d	P6 nt283-418Δ3329-3440
7	3' RACE	F nt3518-d(T)18V	a	(pA)d at nt 5149
			b	(pA)p at nt 3771
			c	non-specific

Nucleotide numbers shown refers to Genbank accession no.: NC_007018.

“Δ” denotes intron.