Table 1. Data-collection and refinement statistics for BGLPf.
Data collection | |
X-ray source | BL41XU, SPring-8 |
Space group | P43212 |
Unit-cell parameters () | a = b = 141.96, c = 343.01 |
Wavelength () | 0.9000 |
Resolution range () | 50.002.35 (2.432.35) |
No. of observed reflections | 1079285 |
No. of unique reflections | 145450 |
Completeness (%) | 97.9 (90.9) |
I/(I) | 17.0 (2.6) |
R merge † | 0.092 (0.326) |
Multiplicity | 7.6 (3.0) |
Refinement | |
No. of protein atoms | 15448 |
No. of water molecules | 358 |
No. of glycerol molecules | 5 |
R factor‡ | 0.177 |
R free § | 0.223 |
R.m.s.d. from ideal values | |
Bond lengths () | 0.022 |
Bond angles () | 1.935 |
B factor (Wilson plot) (2) | 23.82 |
Average B factor (2) | |
Protein | 23.82 |
Water | 22.71 |
Glycerol | 35.71 |
Ramachandran plot (%) | |
Favoured | 96.7 |
Allowed | 99.6 |
PDB code | 3apg |
R merge = , where Ii(hkl) are the individual intensities of the ith observation of reflection hkl and I(hkl) is the average intensity ofreflection hkl with summation over all data.
R factor = , where F obs and F calc are the observed and calculated structure factors, respectively.
R free is equivalent to the R factor but is calculated for 5% of the reflections chosen at random and omitted from the refinement process.