Table 3.
Rank | PSFloger |
DALI |
||||||||
---|---|---|---|---|---|---|---|---|---|---|
TM-scorea | PDB file | Protein name | Species | Classification (reference) | Z-scoreb | PDB file | Protein name | Species | Classification | |
1 | 0.7806 | 2OPW | PHYHD1 | Homo sapiens | Hydroxylase (37) | 10.5 | 2OPW | PHYHD1c | Homo sapiens | Hydroxylase (37) |
2 | 0.7537 | 2FCU | SyrB2 | Pseudomonas syringae | Halogenase (4) | 10.5 | 3GJB | CytC3 | Streptomyces sp. | Halogenase (60) |
3 | 0.7473 | 2A1X | PHYHD1 | Homo sapiens | Hydroxylase (34) | 10.3 | 3NN1 | Hal | Nitrospira defluvii | Halogenase (25) |
4 | 0.7221 | 2CSG | YbiU | S. enterica serovar Typhimurium | Putative oxidoreductase | 9.9 | 3EMR | ECTD | Virgibacillus salexigens | Dioxygenase (43) |
5 | 0.7138 | 2DBN | JW0805 | Escherichia coli | Unknown function | 9.7 | 3HQU | PHD2c | Homo sapiens | Hydroxylase (7) |
6 | 0.7113 | 2HBT | PHD2 | Homo sapiens | Hydroxylase (58) | 9.4 | 2FCU | SyrB2 | Pseudomonas syringae | Halogenase (4) |
7 | 0.6905 | 1UNB | DAOCS | Streptomyces clavuligerus | Oxidoreductase (55) | 9.1 | 3GZE | P4Hc | Chlamydomonas reinhardtii | Hydroxylase (29) |
8 | 0.6802 | 2RDN | PtlH | Streptomyces avermitilis | Hydroxylase (65) | 9.0 | 2RG4 | Q2CBJ1_9RHOB | Oceanicola granulosus | Unknown function |
9 | 0.6793 | 3GJB | CytC3 | Streptomyces sp. | Halogenase (60) | 8.8 | 3MGU | Tpa1 | Saccharomyces cerevisiae | Hydroxylase (27) |
10 | 0.6764 | 1GP6 | ANS | Arabidopsis thaliana | Dioxygenase (59) | 8.7 | 3ITG | PutA | Escherichia coli | Oxioreductase (46) |
The TM-score is a measurement of similarity between two protein structures, and it varies from 0 to 1, with 1 indicating a perfect alignment. A score of 0.5 or higher indicates significant similarity (69).
Structures with Z-scores above 2 are considered to be significant matches (20).
This protein was listed multiple times on the DALI output, with various minor differences (ligands, etc.); the redundant structures are not listed here.