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. 2011 Dec;193(23):6517–6528. doi: 10.1128/JB.05488-11

Table 3.

Top 10 homologous structures to the crystal structure of CT296 as measured by PSFloger and DALI

Rank PSFloger
DALI
TM-scorea PDB file Protein name Species Classification (reference) Z-scoreb PDB file Protein name Species Classification
1 0.7806 2OPW PHYHD1 Homo sapiens Hydroxylase (37) 10.5 2OPW PHYHD1c Homo sapiens Hydroxylase (37)
2 0.7537 2FCU SyrB2 Pseudomonas syringae Halogenase (4) 10.5 3GJB CytC3 Streptomyces sp. Halogenase (60)
3 0.7473 2A1X PHYHD1 Homo sapiens Hydroxylase (34) 10.3 3NN1 Hal Nitrospira defluvii Halogenase (25)
4 0.7221 2CSG YbiU S. enterica serovar Typhimurium Putative oxidoreductase 9.9 3EMR ECTD Virgibacillus salexigens Dioxygenase (43)
5 0.7138 2DBN JW0805 Escherichia coli Unknown function 9.7 3HQU PHD2c Homo sapiens Hydroxylase (7)
6 0.7113 2HBT PHD2 Homo sapiens Hydroxylase (58) 9.4 2FCU SyrB2 Pseudomonas syringae Halogenase (4)
7 0.6905 1UNB DAOCS Streptomyces clavuligerus Oxidoreductase (55) 9.1 3GZE P4Hc Chlamydomonas reinhardtii Hydroxylase (29)
8 0.6802 2RDN PtlH Streptomyces avermitilis Hydroxylase (65) 9.0 2RG4 Q2CBJ1_9RHOB Oceanicola granulosus Unknown function
9 0.6793 3GJB CytC3 Streptomyces sp. Halogenase (60) 8.8 3MGU Tpa1 Saccharomyces cerevisiae Hydroxylase (27)
10 0.6764 1GP6 ANS Arabidopsis thaliana Dioxygenase (59) 8.7 3ITG PutA Escherichia coli Oxioreductase (46)
a

The TM-score is a measurement of similarity between two protein structures, and it varies from 0 to 1, with 1 indicating a perfect alignment. A score of 0.5 or higher indicates significant similarity (69).

b

Structures with Z-scores above 2 are considered to be significant matches (20).

c

This protein was listed multiple times on the DALI output, with various minor differences (ligands, etc.); the redundant structures are not listed here.