Table 3.
Site | Soil layer | OTU code | Actinobacterial OTU | Family | Accession no. | Closest GenBank match | % Match | Significance by Fisher's exact test (2 sided) | Phi value |
---|---|---|---|---|---|---|---|---|---|
SF | Shiro+abv | A50 | Thermomonosporaceae bacterium 2 | Thermomonosporaceae | HQ204366 | FJ037190 | 98 (612/626) | 0.035 | 0.425 |
Shiro+ | A9 | Leucobacter sp. | Microbacteriaceae | HQ204336 | EF138947 | 98 (635/645) | 0.024 | −0.433 | |
A21 | Mycobacterium sp. 4 | Mycobacteriaceae | HQ204341 | GU358074 | 99 (649/653) | 0 | −0.626 | ||
A24 | Uncultured actinobacterium 1 | HQ204343 | EF220614 | 98 (607/622) | 0.025 | −0.409 | |||
A26 | Actinomycetales bacterium 1 | HQ204345 | X92703 | 100 (621/623) | 0.001 | −0.57 | |||
A28 | Cellulomondaceae bacterium | Cellulomonadaceae | HQ204347 | FJ626810 | 97 (514/528) | 0.043 | −0.372 | ||
A30 | Uncultured actinobacterium 3 | HQ204349 | FJ570524 | 99.5 (623/626) | 0.079 | −0.349 | |||
A31 | Uncultured actinobacterium 4 | HQ204350 | FJ570359 | 99 (607/612) | 0.006 | −0.507 | |||
A32 | Uncultured actinobacterium 5 | HQ204351 | EF220691 | 99.8 (614/615) | 0.004 | −0.497 | |||
A37 | Goodfellowiella sp. | Pseudonocardiaceae | HQ204356 | DQ093349 | 97 (593/611) | 0.007 | −0.486 | ||
A39 | Actinospica sp. 2 | Actinospicaceae | HQ204358 | AJ865862 | 99 (633/642) | 0.089 | −0.349 | ||
WF | Shiro+abv | A31 | Uncultured actinobacterium 4 | HQ204350 | FJ570359 | 99 (607/612) | 0.061 | 0.69 | |
A35 | Nocardia sp. | Nocardiaceae | HQ204354 | EF538741 | 97 (546/565) | 0.08 | 0.633 | ||
Shiro+ | A25 | Streptomyces sp. | Streptomycetaceae | HQ204344 | EU080938 | 97 (546/565) | 0.088 | 0.607 | |
A29 | Thermomonosporaceae bacterium 1 | Thermomonosporaceae | HQ204348 | EF663839 | 98 (619/632) | 0.024 | 0.81 | ||
A30 | Uncultured actinobacterium 3 | HQ204349 | FJ570524 | 99.5 (623/626) | 0.039 | −0.624 |
Bold indicates a positive correlation.