Table 6.
Differentially expressed genes (P < 0.05, ≥1.75-fold) in Chardonnay grapevine berries between 10-days after theoretical harvest (TH+10) and theoretical harvest date (TH) of the 2005 and 2006 growing seasons.
| Putative function | Grape Microarray Accession Number (Vv_#) | Grape Nucleotide Accession Number (mRNA) | Grape Gene Accession Number (GSVIVT#) | Most Homologous Arabidopsis Sequence | WBB average ratio | p-value | DSB average ratio | p-value |
|---|---|---|---|---|---|---|---|---|
| Aroma related genes | ||||||||
| Valencene synthase (VvValCS) | Vv_10004183 | FJ696653/AY561843 | GSVIVT01036322001 | At5g23960 | 2.031 | 2.00E-05 | 1.823 | 2.00E-05 |
| Pathogenesis-related genes | ||||||||
| Pathogenesis-related protein 1 (PR-1) | Vv_10011243 | AJ536326 | GSVIVT01037015001 | At2g14580 | 2.049 | 3.00E-05 | 1.558 | 0.00024 |
| Pathogenesis-related protein 1 (PR-1) | Vv_10004981 | XM_002274239 | GSVIVT01037014001 | At2g14610 | 2.059 | 0.00016 | 1.637 | 0.00029 |
| Beta-1,3-glucanase (PR-2) | Vv_10010418 | AF239617 | GSVIVT01035013001 | At4g16260 | 1.566 | 0.00014 | 0.994 | 0.00133 |
| Thaumatin-like protein (PR-5) | Vv_10000872 | XM_002282994 | GSVIVT01019840001 | At4g11650 | 1.337 | 0.00018 | 1.273 | 0.00019 |
| Leucine-rich repeat protein | Vv_10000077 | XM_002263817 | GSVIVT01032059001 | At3g20820 | -1.26 | 0.00015 | -1.668 | 0.0012 |
| Stress-related genes | ||||||||
| Heat shock protein | Vv_10011030 | XM_002281184 | GSVIVT01016426001 | At5g59720 | -1.157 | 0.00016 | -1.399 | 0.00027 |
| Heat shock protein | Vv_10000006 | XM_002281358 | GSVIVT01016429001 | At3g46230 | -0.951 | 0.00788 | -1.133 | 0.00038 |
| Heat shock protein | Vv_10011029 | XM_002281318 | GSVIVT01016428001 | At3g46230 | -1.136 | 7.00E-04 | -1.351 | 0.00013 |
| Growth and development-related genes | ||||||||
| TFL1C protein | Vv_10003390 | XM_002278819 | GSVIVT01010598001 | At5g62040 | 0.929 | 0.00023 | 1.208 | 0.00025 |
| Rapid ALkalinization Factor-like protein | Vv_10004862 | XM_002282632 | GSVIVT01022118001 | - | -0.962 | 0.00191 | -1.067 | 0.00235 |
| Cell wall-modifying enzymes | ||||||||
| Polygalacturonase-like protein | Vv_10013430 | XM_002278894 | GSVIVT01019405001 | At4g23500 | 1.376 | 0.00066 | 1.335 | 0.00031 |
| Pectate lyase (VvPL1) | Vv_10010773 | AY043234 | GSVIVT01029048001 | At1g04680 | -1.014 | 0.00031 | -1.677 | 0.00043 |
| Hormone metabolism and regulation | ||||||||
| Auxin-responsive protein | Vv_10002615 | XM_002284085 | GSVIVT01018099001 | At5g43700 | 1.08 | 0.00032 | 0.946 | 0.00047 |
| Auxin-responsive protein | Vv_10009542 | XM_002279919 | GSVIVT01021779001 | At1g04240 | 1.736 | 7.00E-05 | 1.415 | 0.00045 |
| Gibberellin 2-oxidase | Vv_10009047 | XM_002268137 | GSVIVT01012628001 | At4g21200 | -1.197 | 0.00069 | -1.046 | 0.00037 |
| Transporters and trafficking | ||||||||
| Aquaporin (TIP1;2) | Vv_10003817 | DQ834702 | GSVIVT01033677001 | At2g36830 | -0.802 | 0.00097 | -1.286 | 0.00022 |
| Vacuolar pyrophosphatase | ||||||||
| (vpp2) | Vv_10000514 | AJ557256 | GSVIVT01012841001 | At1g15690 | -0.997 | 0.00018 | -0.911 | 0.00048 |
| Miscellaneous | ||||||||
| Homeobox leucine zipper protein | Vv_10004955 | XM_002262914 | GSVIVT01027407001 | At3g61890 | -1.065 | 0.00029 | -1.076 | 3.00E-04 |
| Heavy-metal-associated domain-containing protein | Vv_10002809 | XM_002277832 | GSVIVT01025598001 | At5g02600 | -0.975 | 0.00029 | -0.95 | 0.00046 |
| GDSL-motif lipase/hydrolase family protein | Vv_10000511 | XM_002271815 | GSVIVT01030528001 | At4g26790 | -0.82 | 0.00068 | -0.853 | 0.00087 |
| Amino acid transporter | Vv_10014047 | XM_002283432 | GSVIVT01011401001 | At3g28960 | -1.053 | 0.00122 | -1.186 | 0.00031 |
| Copper ion binding oxidoreductase | Vv_10001170 | XM_002275642 | GSVIVT01037479001 | At5g21105 | -0.849 | 0.00036 | -0.866 | 0.00052 |
| Peptidase/subtilase | Vv_10008612 | XM_002278256 | GSVIVT01015069001 | At2g05920 | -1.134 | 0.00068 | -1.101 | 0.00131 |
Genes are organized in functional categories. Ratio values are presented as log2. DSB, densimetrically sorted berries; TH, theoretical harvest; TH+10, 10-days after harvest; WBB, whole bunch berries.