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. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395

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Copyright ©2011 Cresawn et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Effects of CLUSTALW and BLASTP thresholds on pham assembly. A. Changes in the total number of phams, number of orphams, and maximum pham size as a function of CLUSTALW threshold (percent identity). B. Changes in the percent of total phams that are orphams and mean pham size as a function of CLUSTALW threshold (percent identity). C. Changes in the total number of phams, number of orphams, and maximum pham size as a function of BLASTP threshold (E-value), superimposed over a CLUSTALW cutoff value of 32.5% identity. D. Change in the mean pham size as a function of BLASTP threshold (E-value), superimposed over a CLUSTALW cutoff value of 32.5% identity.