Table 5.
Trend p-values for associations between genes located on 9p21 and CMM, number of nevi, skin complexion, and tanning ability using gene-based analysis1.
| Gene | #SNP | CMM | Nevi | Skin complexion |
Tanning |
|---|---|---|---|---|---|
| IFNB1 | 23 | 0.79 | 0.97 | 0.25 | 0.02 |
| IFNW1 | 12 | 0.97 | 0.50 | 0.49 | 0.002 |
| IFNA21 | 4 | 0.51 | 0.06 | 0.48 | 0.27 |
| IFNA10 | 2 | 0.20 | 0.07 | 0.32 | 0.41 |
| IFNA16 | 2 | 0.55 | 0.09 | 0.59 | 0.75 |
| IFNA17 | 1 | 0.14 | 0.12 | 0.60 | 0.43 |
| IFNA14 | 3 | 0.24 | 0.39 | 0.52 | 0.32 |
| IFNA5 | 3 | 0.29 | 0.18 | 0.66 | 0.50 |
| KLHL9 | 2 | 0.40 | 0.71 | 0.20 | 0.63 |
| IFNA6 | 4 | 0.21 | 0.62 | 0.55 | 0.94 |
| IFNA2 | 7 | 0.36 | 0.72 | 0.28 | 0.72 |
| IFNA8 | 11 | 0.19 | 0.68 | 0.14 | 0.54 |
| IFNA1 | 7 | 0.96 | 0.38 | 0.95 | 0.34 |
| IFNE1 | 5 | 0.33 | 0.92 | 0.84 | 0.79 |
| MTAP | 17 | 0.85 | 0.06 | 0.26 | 1.00 |
| CDKN2A | 25 | 0.79 | 0.01 | 0.90 | 0.81 |
| CDKN2B | 17 | 0.99 | 0.72 | 0.30 | 0.03 |
| ANRIL | 15 | 0.68 | 0.24 | 0.12 | 0.04 |
| TUSC1 | 12 | 0.02 | 0.44 | 0.50 | 0.62 |
| PLAA | 14 | 0.99 | 0.89 | 0.05 | 0.91 |
| IFNK | 9 | 0.38 | 0.45 | 0.95 | 0.15 |
| ACO1 | 35 | 0.0004 | 0.90 | 0.56 | 0.0002 |
p-values were computed using rank-truncated test statistics and a permutation-based sampling procedure (20,000 permutations).