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. Author manuscript; available in PMC: 2011 Dec 8.
Published in final edited form as: Fam Cancer. 2010 Dec;9(4):625–633. doi: 10.1007/s10689-010-9356-3

Table 5.

Trend p-values for associations between genes located on 9p21 and CMM, number of nevi, skin complexion, and tanning ability using gene-based analysis1.

Gene #SNP CMM Nevi Skin
complexion
Tanning
IFNB1 23 0.79 0.97 0.25 0.02
IFNW1 12 0.97 0.50 0.49 0.002
IFNA21 4 0.51 0.06 0.48 0.27
IFNA10 2 0.20 0.07 0.32 0.41
IFNA16 2 0.55 0.09 0.59 0.75
IFNA17 1 0.14 0.12 0.60 0.43
IFNA14 3 0.24 0.39 0.52 0.32
IFNA5 3 0.29 0.18 0.66 0.50
KLHL9 2 0.40 0.71 0.20 0.63
IFNA6 4 0.21 0.62 0.55 0.94
IFNA2 7 0.36 0.72 0.28 0.72
IFNA8 11 0.19 0.68 0.14 0.54
IFNA1 7 0.96 0.38 0.95 0.34
IFNE1 5 0.33 0.92 0.84 0.79
MTAP 17 0.85 0.06 0.26 1.00
CDKN2A 25 0.79 0.01 0.90 0.81
CDKN2B 17 0.99 0.72 0.30 0.03
ANRIL 15 0.68 0.24 0.12 0.04
TUSC1 12 0.02 0.44 0.50 0.62
PLAA 14 0.99 0.89 0.05 0.91
IFNK 9 0.38 0.45 0.95 0.15
ACO1 35 0.0004 0.90 0.56 0.0002
1.

p-values were computed using rank-truncated test statistics and a permutation-based sampling procedure (20,000 permutations).